Genome sc|0005913


Name

Not registered

Database

NCBI Assembly

Accession

SAMN43947800

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:SAMN43947800
Cultures
Strain sc|0041737
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.99%
  • Contamination: 0.38%
  • Quality: 98.09
Sequencing depth
274.0 ×
Source
Other features
  • G+C Content: 42.0%
Submitter comments
Draft de novo assembly was generated with Flye v. 2.9.2-b1786, setting the parameters --meta and --extra-params min_read_cov_cutoff=10. The draft assemblies were subsequently polished twice with Medaka v. 1.11.3 (Oxford Nanopore Technologies, Oxford, United Kingdom). Assembly graph was inspected with Bandage v. 0.8.1. SemiBin2 v. 2.0.2 was implemented as an independent binning approach using a self-supervised learning model (–sequencing-type long_read–minfasta-kbs 1500). Completeness and contamination levels were assessed using CheckM2 v. 1.0.1. Genome chimerism was evaluated using GUNC v. 1.0.6.
Automated checks
Failed: Cannot find ncbi:assembly:SAMN43947800

Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023
Location
Not detected
Toponym
Geo Loc Name: Denmark: Fyn
Environment
Sample Type: cell culture
Isolation Source: Beach sand, intertidal zone
Other
Not detected
Package
Not detected
All retrieved samples

Metadata retrieved about 1 month ago


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