SeqCode Registry
Register List https://seqco.de/r:bdqeb1q2 [2025]

Izemobacterium crustae sp. nov.

Submitted by Viver, Tomeu

Abstract

Description of Izemobacterium crustae sp. nov. recovered from oceanic crust.

Genus Izemobacterium

Etymology
[I.ze.mo.bac.te'ri.um] Gr. neut. n. izema, a settling down, sediment; N.L. neut. n. bacterium, rod; N.L. neut. n. Izemobacterium, a bacterium from settling or subsurface environments
Nomenclatural type
Species Izemobacterium crustaeTs
Description
The description of the genus is identical to that given for the type species. 
The MAG encodes a nearly complete glycolytic pathway and a complete lactate fermentation pathway, while gluconeogenesis and the tricarboxylic acid cycle are absent, consistent with a fermentative lifestyle and partial oxidative metabolism typical of anaerobic or microaerophilic organisms. An F₁F₀-type ATP synthase is present, suggesting energy generation linked to proton or sodium motive force. No carbon fixation pathways were detected, supporting a heterotrophic mode of nutrition. Genes for β-glucosidase and pullulanase indicate conserved oligosaccharide degradation, and biosynthetic pathways for several amino acids (serine, threonine, glutamine, cysteine, and glycine) are present. The MAG also encodes ferrous iron uptake systems, a complete DNA degradation locus (including extracellular nucleases, ABC transporters, and salvage enzymes), and a conserved sporulation gene set (spoIIIE, spoVG, kapD, spsF), consistent with endospore formation.
Classification
Bacteria » Bacillota » Bacilli » Izemoplasmatales » Izemoplasmataceae » Izemobacterium
References
Effective publication: Viver, Robador, 2026 [1]

Species Izemobacterium crustaeTs

Etymology
[crus'tae] L. gen. n. crustae, from crust, referring to the subseafloor oceanic crust from which this organism was recovered
Nomenclatural type
NCBI Assembly: GCA_052978905.1 Ts
Description
The MAG is 2.2 Mb with a GC content of 33.6%, completeness 97.78%, contamination 5.58%. Phylogenomic analysis places it within the family Izemoplasmataceae. The AAI value of the MAG and the close relative species Izemoplasma acidinucleici was 57.18%. The MAG encodes a nearly complete glycolytic pathway and a complete lactate fermentation pathway, while gluconeogenesis and the tricarboxylic acid cycle are absent, consistent with a fermentative lifestyle and partial oxidative metabolism typical of anaerobic or microaerophilic organisms. No carbon fixation pathways were detected, supporting a heterotrophic mode of nutrition. Genes for β-glucosidase and pullulanase indicate conserved oligosaccharide degradation, and biosynthetic pathways for several amino acids (serine, threonine, glutamine, cysteine, and glycine) are present. The MAG also encodes ferrous iron uptake systems, a complete DNA degradation locus (including extracellular nucleases, ABC transporters, and salvage enzymes), and a conserved sporulation gene set (spoIIIE, spoVG, kapD, spsF), consistent with endospore formation.

Classification
Bacteria » Bacillota » Bacilli » Izemoplasmatales » Izemoplasmataceae » Izemobacterium » Izemobacterium crustaeTs
References
Effective publication: Viver, Robador, 2026 [1]

References

  1. Viver, Robador (2026). Genomic insights into Izemobacterium crustae gen. nov., sp. nov., reveal metabolic adaptations for persistence in the oceanic crust. Systematic and Applied Microbiology. DOI:10.1016/j.syapm.2025.126679

Register List Certificate of Validation

On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:bdqeb1q2 submitted by Viver, Tomeu and including 2 new names has been successfully validated.


Date of Priority: 2025-11-26 08:58 UTC
DOI: 10.57973/seqcode.r:bdqeb1q2