SeqCode Registry
Register List https://seqco.de/r:bdqeb1q2 [2025]

Izemobacterium crustae sp. nov.

Submitted by Viver, Tomeu

Table 1: Complete list of names proposed in the current register list.

Proposed Taxon Etymology Description Parent Taxon Type Registry URL
Genus Izemobacterium [I.ze.mo.bac.te'ri.um] Gr. neut. n. izema, a settling down, sediment; N.L. neut. n. bacterium, rod; N.L. neut. n. Izemobacterium, a bacterium from settling or subsurface environments
The description of the genus is identical to that given for the type species. 
The MAG encodes a nearly complete glycolytic pathway and a complete lactate fermentation pathway, while gluconeogenesis and the tricarboxylic acid cycle are absent, consistent with a fermentative lifestyle and partial oxidative metabolism typical of anaerobic or microaerophilic organisms. An F₁F₀-type ATP synthase is present, suggesting energy generation linked to proton or sodium motive force. No carbon fixation pathways were detected, supporting a heterotrophic mode of nutrition. Genes for β-glucosidase and pullulanase indicate conserved oligosaccharide degradation, and biosynthetic pathways for several amino acids (serine, threonine, glutamine, cysteine, and glycine) are present. The MAG also encodes ferrous iron uptake systems, a complete DNA degradation locus (including extracellular nucleases, ABC transporters, and salvage enzymes), and a conserved sporulation gene set (spoIIIE, spoVG, kapD, spsF), consistent with endospore formation.
Izemoplasmataceae Izemobacterium crustaeTs seqco.de/i:54823
Species Izemobacterium crustaeTs [crus'tae] L. gen. n. crustae, from crust, referring to the subseafloor oceanic crust from which this organism was recovered
The MAG is 2.2 Mb with a GC content of 33.6%, completeness 97.78%, contamination 5.58%. Phylogenomic analysis places it within the family Izemoplasmataceae. The AAI value of the MAG and the close relative species Izemoplasma acidinucleici was 57.18%. The MAG encodes a nearly complete glycolytic pathway and a complete lactate fermentation pathway, while gluconeogenesis and the tricarboxylic acid cycle are absent, consistent with a fermentative lifestyle and partial oxidative metabolism typical of anaerobic or microaerophilic organisms. No carbon fixation pathways were detected, supporting a heterotrophic mode of nutrition. Genes for β-glucosidase and pullulanase indicate conserved oligosaccharide degradation, and biosynthetic pathways for several amino acids (serine, threonine, glutamine, cysteine, and glycine) are present. The MAG also encodes ferrous iron uptake systems, a complete DNA degradation locus (including extracellular nucleases, ABC transporters, and salvage enzymes), and a conserved sporulation gene set (spoIIIE, spoVG, kapD, spsF), consistent with endospore formation.

Izemobacterium NCBI Assembly: GCA_052978905.1 Ts seqco.de/i:54822