Table 1: Complete list of names proposed in the current register list.
| Proposed Taxon | Etymology | Description | Parent Taxon | Type | Registry URL |
|---|---|---|---|---|---|
| Genus Aalborgicola | [Aal.bor.gi'co.la] N. L. neut. n. Aalborg, the city of Aalborg; L. suff. -cola, inhabitant; N.L. masc. n. Aalborgicola, an inhabitant of Aalborg | Genus of species found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Most species are predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. All species (except Aalborgicola danicus) have the potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Burkholderiaceae | Aalborgicola defluviihabitansTs | seqco.de/i:44106 |
| Genus Aalborgiella | [Aal.bor.gi.el'la] N.L. fem. dim. n. Aalborgiella, bacterium named after the city Aalborg where the MAG had been retrieved | Genus of rod shaped bacteria found in activated sludge. Type species is Aalborgiella aggregata.
Type species( Aalborgiella aggregata) is a rod shaped bacterium (1.4± 0.3 x 0.4±0.1 µm) abundant in activated sludge globally. Based on FISH analysis it seems to grow along filaments in activated sludge. Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of branched amino acids. Presence of narGHI genes showed potential to reduce nitrate. |
Burkholderiaceae | Aalborgiella aggregataTs | seqco.de/i:44101 |
| Genus Defluviibacillus | [De.flu.vi.i.ba.ci'llus] L. neut. n. defluvium, sewage; L. masc. n. bacillus, rod-shaped bacterium; N.L. masc. n. Defluviibacillus, indicating a rod-shaped bacterium from sewage | A genus of rod shaped bacteria found in activated sludge. Type species is Defluviibacillus avedoerensis. The type species is a rod shaped bacteria (2.1± 0.4 x 0.6±0.1 µm) abundant in activated sludge globally. Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of polar amino acids and branched amino acids. Presence of narGHI genes showed potential to reduce nitrate along with potential for further conversion via norB . It also had the potential to reduce nitrite to nitric oxide via nitrite reductase, nirS. Defluviibacillus avedoerensis had predicted all genes of the three pathways (polyP, glycogen and PHA) associated with Pao metabolism.
|
Burkholderiaceae | Defluviibacillus avedoerensisTs | seqco.de/i:44099 |
| Genus Egaibacter | [E.ga.i.bac'ter] N. L. masc. n. Egaa, the city Egaa where the MAG had been retrieved; N.L. masc. n. bacter, bacterium; N.L. masc. n. Egaibacter, indicating a bacterium found in Egaa | Genus of bacteria found in activated sludge.
Species generally have the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. They can also utilize branched chain amino acids (livFGHKM). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs. Potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. |
Burkholderiaceae | Egaibacter danicusTs | seqco.de/i:44121 |
| Genus Skiveiella | [Ski.ve.i.el'la] N.L. fem. dim. n. Skiveiella, named after the city Skive where the MAG had been retrieved | Genus found in actived sludge. Type species is Skiveiella danica
|
Burkholderiaceae | Skiveiella danicaTs | seqco.de/i:44104 |
| Species Aalborgicola bjergmarkensis | [bjerg.mar.ken'sis] N.L. masc. adj. bjergmarkensis, of the city of Bjergmarken, from where the MAG was obtained | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. The gtsABC+malK transporters of of glucose uptake was also predicted. Potential to reduce nitrate with narGHI. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Aalborgicola | NCBI Assembly: GCA_016708725.1 Ts | seqco.de/i:44112 |
| Species Aalborgicola danicus | [da'ni.cus] L. masc. adj. danicus, Danish | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Can utilize branched chain amino acids (livFGHKM). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. Potential to reduce nitrate with napAB along with the reduction of nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Aalborgicola | NCBI Assembly: GCA_016703945.1 Ts | seqco.de/i:44114 |
| Species Aalborgicola defluviihabitansTs | [de.flu.vii.ha'bi.tans] L. neut. n. defluvium, sewage; L. pres. part. habitans, inhabiting; L. masc. part. adj. defluviihabitans, pertaining to the habitat where the MAG was sequenced from. | Bacterium found in activated sludge. Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. Potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted.
|
Aalborgicola | NCBI Assembly: GCA_016705575.1 Ts | seqco.de/i:44105 |
| Species Aalborgicola lynettensis | [ly.net.ten'sis] N.L. masc. adj. lynettensis, of the city of Lynetten, from where the MAG was obtained | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Can utilize branched chain amino acids (livFGHKM) Potential to reduce nitrate with narGHI. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Aalborgicola | NCBI Assembly: GCA_016719405.1 Ts | seqco.de/i:44113 |
| Species Aalborgiella aggregataTs | [ag.gre.ga'ta] L. fem. part. adj. aggregata, joined together | Rod shaped bacterium (1.4± 0.3 x 0.4±0.1 µm) abundant in activated sludge globally. Based on FISH analysis it seems to grow along filaments in activated sludge. Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of branched amino acids. Presence of narGHI genes showed potential to reduce nitrate.
|
Aalborgiella | NCBI Assembly: GCA_016708645.1 Ts | seqco.de/i:44100 |
| Species Defluviibacillus avedoerensisTs | [a.ve.doe.ren'sis] N.L. masc. adj. avedoerensis, of the city Avedoere from which the MAG is retrieved from | Rod shaped bacteria (2.1± 0.4 x 0.6±0.1 µm) abundant in activated sludge globally. Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of polar amino acids and branched amino acids. Presence of narGHI genes showed potential to reduce nitrate along with potential for further conversion via norB . It also had the potential to reduce nitrite to nitric oxide via nitrite reductase, nirS. Defluviibacillus avedoerensis had predicted all genes of the three pathways (polyP, glycogen and PHA) associated with Pao metabolism.
|
Defluviibacillus | NCBI Assembly: GCA_016703665.1 Ts | seqco.de/i:44098 |
| Species Egaibacter danicusTs | [da'ni.cus] L. masc. adj. danicus, Danish | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Glucose uptake of via the gtsABC+malK transporter was also predicted. Can utilize branched chain amino acids (livFGHKM). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs. Potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. |
Egaibacter | NCBI Assembly: GCA_016707075.1 Ts | seqco.de/i:44120 |
| Species Rhodoferax bjergmarkensis | [bjerg.mar.ken'sis] N.L. masc. adj. bjergmarkensis, of the city of Bjergmarken, from where the MAG was obtained | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Can utilize branched chain amino acids (livFGHKM). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, and acetate kinase, ackA Potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Rhodoferax | NCBI Assembly: GCA_016708345.1 Ts | seqco.de/i:44117 |
| Species Rhodoferax mariagerensis | [ma.ri.a.ge.ren'sis] N.L. masc. adj. mariagerensis, of the city of Mariager where the MAG was obtained | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Can utilize branched chain amino acids (livFGHKM) and polar amino acids (ABC.PA.A, ABC.PA.P, ABC.PA.S). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. Potential to reduce nitrate with narGHI |
Rhodoferax | NCBI Assembly: GCA_016719055.1 Ts | seqco.de/i:44118 |
| Species Rhodoferax odensensis | [o.den.sen'sis] N.L. masc. adj. odensensis, pertaining to Odense, a city in Denmark where the original sample was collected | acterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Can utilize branched chain amino acids (livFGHKM). Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. Potential to reduce nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Rhodoferax | NCBI Assembly: GCA_016718405.1 Ts | seqco.de/i:44116 |
| Species Rhodoferax randersensis | [ran.der.sen'sis] N.L. masc. adj. randersensis, from the city Randers where the MAG had been retrieved | Bacterium found in activated sludge.
Genome-wide gene annotation suggested the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. Predicted to convert acetate to acetyl-CoA via acetyl-CoA synthetase, acs, acetate kinase, ackA, and phosphate acetyltransferase, pta. Potential to reduce nitrate with narGHI along with the reduction of nitrate to nitric oxide with nirS. Lastly it also had nitrous oxide reductase, nosZ predicted. |
Rhodoferax | NCBI Assembly: GCA_016718155.1 Ts | seqco.de/i:44115 |
| Species Skiveiella danicaTs | [da.ni'ca] L. fem. adj. danica, Danish | Bacteria found in activated sludge. Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of polar amino acids.
Presence of narGHI genes showed potential to reduce nitrate. |
Skiveiella | NCBI Assembly: GCA_016721925.1 Ts | seqco.de/i:44103 |