SeqCode Registry
Register List https://seqco.de/r:kxlu-6m0 [2024]

Register list for 7 new names including Tiamatella incendiivivens sp. nov. gen. nov.

Submitted by St. John, Emily

Genus Calypsonella

Etymology
[Ca.lyp.so.nel'la] N.L. dim. fem. n. Calypsonella, little Calypso, referring to a Nereid water spirit in Greek mythology
Nomenclatural type
Species Calypsonella navitaeTs
Description
Members of this taxon were identified at Mariner on the Valu Fa Ridge in the Lau Basin and Lucky Strike, Mid-Atlantic Ridge. A phylogenomic reconstruction using 53 archaeal marker genes places MAGs of this genus in a well-supported monophyletic clade. Using AAI, MAGs are approximately 56% similar to Aeropyrum pernix, and they could not be related to any previously described genus using GTDB-Tk taxonomic analysis. The 16S rRNA gene recovered from the type genome is approximately 96 to 97% similar to the 16S rRNA genes of Aeropyrum pernix, Aeropyrum camini, Thermodiscus maritimus and Stetteria hydrogenophila, consistent with the level of 16S rRNA gene sequence divergence seen between the genera Aeropyrum, Stetteria and Thermodiscus (~96–97%). Based on ANI analysis, each of the three MAGs in this genus represents a distinct species (~73–75% similarity). Functional gene analysis suggests that members of this genus are likely non-motile anaerobes, and they may utilize protein-rich carbon sources and at least one member may reduce sulfur, thiosulfate, polysulfides or selenite. 
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Calypsonella
References
Effective publication: St. John, Reysenbach, 2024 [1]

Genus Tiamatella

Etymology
[Ti.a.ma.tel'la] N.L. dim. fem. n. Tiamatella, little Tiamat, referring to an ancient Mesopotamian primordial sea goddess
Nomenclatural type
Species Tiamatella incendiivivensTs
Description
Delineation of this genus is supported by AAI, phylogenomic analysis, 16S rRNA gene comparison and taxonomic assignment in GTDB. MAGs assigned to this genus have been identified at two hydrothermal vent fields along the Eastern Lau Spreading Center (ABE and Tui Malila), Mariner vent field on the Valu Fa Ridge, Lau Basin, the Lower Cone of the deep-sea Brothers volcano along the Kermadec arc and Lucky Strike vent field along the Mid-Atlantic Ridge. Members of this taxon are approximately 51–54% similar to Aeropyrum pernix and 50–52% similar to Caldisphaera lagunensis by AAI. They form a well-supported monophyletic clade in a concatenated phylogenomic tree constructed using 53 archaeal genes. A 16S rRNA gene recovered from the type genome shows ~89 to 91% similarity to Aeropyrum pernix, Aeropyrum camini, Thermodiscus maritimus and Stetteria hydrogenophila. Based on functional genomic analysis, members of this genus are likely anaerobic and may utilize proteins or amino acids as carbon sources. They are auxotrophic for purines and pyrimidines. Several members of this genus also encode DMSO reductase family genes from the psrA/phsA/sreA/srrA clade and may utilize polysulfides, thiosulfate, sulfur, and/or selenite as energy sources. ANI analysis suggests this genus includes at least five distinct species, and motility is likely variable between species. The name proposed here is derived from a primordial Mesopotamian sea goddess depicted as both a chaotic and creative force, and it references the turbulent but biologically rich environments in which these Archaea inhabit.
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Tiamatella
References
Effective publication: St. John, Reysenbach, 2024 [1]

Genus Hestiella

Etymology
[he.sti.el'la] N.L. dim. fem. n. Hestiella, little Hestia, named for the Greek goddess of the hearth and home
Nomenclatural type
Species Hestiella acidicharensTs
Description
Identification of this genus is supported by phylogenomic analysis, 16S rRNA comparison, AAI, environmental distribution and functional genomic differences. MAGs belonging to this genus were identified from multiple samples, over several years, from the Mariner deep-sea vent field on the Valu Fa Ridge in the Lau Basin, and from Upper and Lower Cone at the deep-sea Brothers volcano along the Kermadec arc. Based on ANI analysis, the genus includes two distinct species (92% ANI between spp.). In a concatenated gene tree using 53 archaeal marker genes, this genus forms a highly supported monophyletic clade most closely related to terrestrial Caldisphaera. AAI between members of this genus and Caldisphaera lagunensis is approximately 64.05 to 64.29%, and a full-length 16S rRNA gene recovered from the type species is 94.07% similar to C. lagunensis. Functional genomic analysis suggests this genus are motile anaerobic heterotrophs that degrade protein-rich carbon sources and potentially starch and/or glycogen. It may be distinguished from Caldisphaera by coding potential for a perchlorate/nitrate reductase gene likely used in anaerobic respiration, NAD(P)+ and pyridoxal 5- phosphate biosynthesis and, in some cases, inosine monophosphate biosynthesis. The apparent absence of superoxide dismutase genes also suggests members of this genus may be strictly anaerobic unlike their mildly aero-tolerant relative C. lagunensis. The name proposed for this genus references the lifestyle of these Archaea which thrive in the ‘home-like’ oasis of warmth and nourishment provided by deep-sea vents. 
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Hestiella
References
Effective publication: St. John, Reysenbach, 2024 [1]

Species Calypsonella navitaeTs

Etymology
[na'vi.tae] L. gen. n. navitae, of a mariner, sailor; referring both to the marine habitat and to the Mariner deep sea vent along the Eastern Lau Spreading Center
Nomenclatural type
NCBI Assembly: GCA_035175045.1 Ts
Description
The MAG belonging to this species was assembled and binned from a hydrothermal metagenome from the ‘Toilet Bowl’ at Mariner deep sea vent field along the Valu Fa Ridge in the Lau Basin. The genome consists of 65 contigs totaling 1,604,348 bp in length, with a GC content of 62.4%. It encodes a near-complete 16S rRNA gene (1403 bp), a partial 23S rRNA gene, and tRNA genes for all 20 standard amino acids. Analysis with CheckM2 suggests this MAG is 98.84% complete with 0.61% contamination. Phylogenomic reconstruction places this species within Calypsonella. Based on functional gene analysis, this lineage is likely a non-motile anaerobe that degrades protein-rich carbon sources, and it likely grows best at ~91°C.
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Calypsonella » Calypsonella navitaeTs
References
Effective publication: St. John, Reysenbach, 2024 [1]

Species Thermodiscus eudorianus

Etymology
[eu.dor.i.a'nus] N.L. masc. adj. eudorianus, pertaining to Eudora, referencing to the Nereid water spirit in Greek mythology
Nomenclatural type
NCBI Assembly: GCA_015521085.1 Ts
Description
The MAG representing this species was obtained from the Northwest Caldera Wall at the deep-sea Brothers volcano along the Kermadec arc. The MAG is composed of 10 contigs, totaling 1,522,352 bp in length, with a GC content of 54.2%. Based on CheckM2 analysis, the genome is about 95.13% complete and 0.11% contaminated, and it includes a complete 16S rRNA gene, a partial 23S rRNA gene and tRNA genes for all 20 standard amino acids. Inclusion of this MAG in Thermodiscus is supported by 16S rRNA gene sequence identity, and its distinction as a unique species is based on geographical location at a deep-sea volcano, and ANI-based divergence between Thermodiscus MAGs. Based on functional genomic analysis, this species is likely a non-motile, piliated anaerobic heterotroph that degrades protein-rich carbon sources and may reduce sulfur, thiosulfate, polysulfides or selenite. It is predicted to grow best at approximately 90°C. The name proposed for this species refers to an ocean-associated Nereid spirit who is the sister of Calypso, referencing the phylogenetic relationship between the Calypsonella and Thermodiscus.
Classification
Archaea » Thermoproteota » Thermoprotei » Desulfurococcales » Desulfurococcaceae » Thermodiscus » Thermodiscus eudorianus
References
Effective publication: St. John, Reysenbach, 2024 [1]

Species Tiamatella incendiivivensTs

Etymology
[in.cen.di.i.vi'vens] L. neut. n. incendium, fire; L. pres. part. vivens, living; N.L. fem. adj. incendiivivens, living in or near the fire, referring to the active volcanic environment of Lower Cone, Brothers volcano
Nomenclatural type
NCBI Assembly: GCA_015522635.1 Ts
Description
The MAG representing this species was obtained from a sample from the Lower Cone of the deep-sea Brothers volcano along the Kermadec arc. The genome consists of 27 contigs, totaling 1,454,292 bp in length, and has a GC content of 41.6%. Based on CheckM2, the MAG is approximately 95.79% complete with 1.74% contamination. It encodes a complete 16S rRNA gene and tRNA genes for 19 standard amino acids. Phylogenomic analysis places this genome within Tiamatella. Based on functional genomic analysis, this organism is likely a non-motile anaerobe that utilizes protein-rich carbon sources and may derive energy from reduction of sulfur, polysulfides, thiosulfate or selenite. It is predicted to be a hyperthermophile, growing best at approximately 80°C. 
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Tiamatella » Tiamatella incendiivivensTs
References
Effective publication: St. John, Reysenbach, 2024 [1]

Species Hestiella acidicharensTs

Etymology
[a.ci.di.char'ens] L. neut. adj. acidum, acid; N.L. part. adj. charens, delighting in, from Gr. v. chairo to rejoice or delight in; N.L. part. adj. acidicharens, delighting in acid
Nomenclatural type
NCBI Assembly: GCA_035161305.1 Ts
Description
Genomes of members of this species were recovered from an acidic hydrothermal vent at Mariner on the Valu Fa Ridge in the Lau Basin and the Upper Cone of the deep-sea Brothers volcano along the Kermadec arc. MAGs range in size from approximately 1.06 to 1.48 Mbp and are in 77 to 157 contigs, with a G + C content of 39.9 to 40.2%. Based on CheckM2 estimates, MAG completeness ranges from 76.15 to 96.42%, while contamination is 0.03 to 0.39%. ANI between members of this species is >97%, and phylogenomic analysis with 53 archaeal marker genes places this species in Hestiella. Based on functional gene analysis, members of this species are likely motile anaerobic nitrate and/or perchlorate reducers that degrade protein-rich carbon sources, starch and/or glycogen, growing best at approximately 82 to 83°C. 
Classification
Archaea » Thermoproteota » Thermoprotei » Acidilobales » Acidilobaceae » Hestiella » Hestiella acidicharensTs
References
Effective publication: St. John, Reysenbach, 2024 [1]

References

  1. St. John, Reysenbach (2024). Genomic comparison of deep-sea hydrothermal genera related to Aeropyrum, Thermodiscus and Caldisphaera, and proposed emended description of the family Acidilobaceae. Systematic and Applied Microbiology. DOI:10.1016/j.syapm.2024.126507

Register List Certificate of Validation

On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:kxlu-6m0 submitted by St. John, Emily and including 7 new names has been successfully validated.


Date of Priority: 2024-05-07 08:34 UTC
DOI: 10.57973/seqcode.r:kxlu-6m0