SeqCode Registry
Register List https://seqco.de/r:sfdglxu8 [2024]

Register list for 31 new names from Prabhu et al. 2024

Submitted by Chuvochina, Maria

Table 1: Complete list of names proposed in the current register list.

Proposed Taxon Etymology Description Parent Taxon Type Registry URL
Order Australimonadales [Aus.tra.li.mo.na.da'les] N.L. fem. n. Australimonas, type genus of the order; -ales, ending to denote an order; N.L. fem. pl. n. Australimonadales, the Australimonas order
The description of Australimonadales is the same as that of Australimonas. The former name for this order is UBA2963.
Dehalococcoidia Australimonas seqco.de/i:46751
Order Eutrophobiales [Eu.tro.pho.bi.a'les] N.L. masc. n. Eutrophobius, type genus of the order; -ales, ending to denote an order; N.L. fem. pl. n. Eutrophobiales, the Eutrophobius order
The description of Eutrophobiales is the same as that of Eutrophobius. The former name for this order is UBA4486.
Gammaproteobacteria Eutrophobius seqco.de/i:46757
Family Eutrophobiaceae [Eu.tro.pho.bi.a.ce'ae] N.L. masc. n. Eutrophobius, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Eutrophobiaceae, the Eutrophobius family
The description of Eutrophobiaceae is same as that of Eutrophobius. The former name for this family is UBA4486.
Eutrophobiales Eutrophobius seqco.de/i:46756
Family Eutrophovitaceae [Eu.tro.pho.vi.ta.ce'ae] N.L. fem. n. Eutrophovita, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Eutrophovitaceae, the Eutrophovita family
The description of Eutrophovitaceae is same as that of Eutrophovita. The former name for this family is UBA3031.
Burkholderiales Eutrophovita seqco.de/i:46754
Family Marisalimonadaceae [Ma.ri.sa.li.mo.na.da.ce'ae] N.L. fem. n. Marisalimonas, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Marisalimonadaceae, the Marisalimonas family
The description of Marisalimonadaceae is the same as for Marisalimonas. The former name for this family is AAA536-G10.
Puniceispirillales Marisalimonas seqco.de/i:46752
Family Australimonadaceae [Aus.tra.li.mo.na.da.ce'ae] N.L. fem. n. Australimonas, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Australimonadaceae, the Australimonas family
The description of Australimonadaceae is the same as for Australimonas. The former name for this family is UBA2963.
Australimonadales Australimonas seqco.de/i:46750
Family Eutrophomonadaceae [Eu.tro.pho.mo.na.da.ce'ae] N.L. fem. n. Eutrophomonas, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Eutrophomonadaceae, the Eutrophomonas family
The description of Eutrophomonadaceae is the same as that of Eutrophomonas. The former name for this family is UBA3031.
Burkholderiales Eutrophomonas seqco.de/i:46753
Family Salivitaceae [Sa.li.vi.ta.ce'ae] N.L. fem. n. Salivita, type genus of the family; -aceae, ending to denote a family; N.L. fem. pl. n. Salivitaceae, the Salivita family
The description of Salivitaceae is the same as that of Salivita. The former name for this family is HTCC2089.
Pseudomonadales Salivita seqco.de/i:46755
Genus Eutrophobius [Eu.tro.pho.bi'us] Gr. adv. , good; Gr. adj. trophos, feeder; Gr. masc. n. bios, life; N.L. masc. n. Eutrophobius, life associated with eutrophic environments
This is a novel group of the family and order UBA4486. The description is identical to that of the type species.
Eutrophobiaceae Eutrophobius brisbanensisTs seqco.de/i:46745
Genus Salinivivens [Sa.li.ni.vi'vens] N.L. masc. adj. salinus, saline; L. part. adj. vivens, living; N.L. masc. n. Salinivivens, a microbial organism thriving in saline conditions
The former name for this genus is MED-G52. The description is identical to that of the type species.
Paracoccaceae Salinivivens marinusTs seqco.de/i:44234
Genus Eutrophovita [Eu.tro.pho.vi'ta] Gr. adv. , good; Gr. masc. / fem. adj. trophos, feeder; L. fem. n. vita, life; N.L. fem. n. Eutrophovita, an organism associated with eutrophic environments
This is a novel group of the family UBA3031 within order Burkholderiales. The description is identical to that of the type species.
Eutrophovitaceae Eutrophovita brisbanensisTs seqco.de/i:46739
Genus Marisalimonas [Ma.ri.sa.li.mo'nas] L. neut. n. mare, the sea; L. masc. n. sal, salt; N.L. fem. n. monas, a unit; N.L. fem. n. Marisalimonas, a microbe occurring in saline conditions in the sea
The former name for this genus is AAA536-G10. The description is identical to that of the type species.
Marisalimonadaceae Marisalimonas marinaTs seqco.de/i:46734
Genus Eutrophosalina [Eu.tro.pho.sa.li'na] Gr. adj. , good; Gr. adj. trophos, feeder; N.L. fem. adj. salina, salty; N.L. fem. n. Eutrophosalina, a microbe adapted to eutrophic and saline environments
The former name for this genus is MED-G14. The description is identical to that of the type species.
Flavobacteriaceae Eutrophosalina marinaTs seqco.de/i:46728
Genus Eutrophocola [Eu.tro.pho.co'la] Gr. adv. , good; Gr. adj. trophos, feeder; L. masc. / fem. suff. cola, inhabitant; N.L. fem. n. Eutrophocola, referring to a microbe in eutrophic aquatic environments
The former name for this genus is RFVC01. The description is identical to that of the type species.
Pseudohongiellaceae Eutrophocola salsuginisTs seqco.de/i:46743
Genus Australimonas [Aus.tra.li.mo'nas] L. adj. australis, southern; N.L. fem. n. monas, a unit; N.L. fem. n. Australimonas, a unit from the south, referring to Australia where the organism was found
The description is identical to that of the type species.
Australimonadaceae Australimonas brisbanensisTs seqco.de/i:46730
Genus Salivita [Sa.li.vi'ta] L. masc. n. sal, salt; L. fem. n. vita, life; N.L. fem. n. Salivita, an organism associated with saltwater
The former name for this genus is RGAU01. The description is identical to that of the type species.
Salivitaceae Salivita marinaTs seqco.de/i:46741
Genus Salsuginivita [Sal.su.gi.ni.vi'ta] L. fem. n. salsugo, brackish water; L. fem. n. vita, life; N.L. fem. n. Salsuginivita, a bacterium found in brackish habitats
The former name for this genus is CAIYFD01. The description is identical to that of the type species.
Opitutaceae Salsuginivita brisbanensisTs seqco.de/i:46748
Genus Eutrophomonas [Eu.tro.pho.mo'nas] Gr. adv. , good; Gr. adj. trophos, feeder; L. fem. n. monas, a unit; N.L. fem. n. Eutrophomonas, a unit associated with eutrophic environments
This is a novel group of the family UBA3031 within order Burkholderiales. The description is identical to that of the type species.
Eutrophomonadaceae Eutrophomonas brisbanensisTs seqco.de/i:46737
Species Eutrophocola salsuginisTs [sal.su'gi.nis] L. gen. n. salsuginis, of the brackish water
Inferred to break down a Chitin and Pectin, as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Carries genes for nitrate uptake (NRT2) and anaerobic dissimilatory nitrate reduction (nirBD). Capable of sulfate assimilation (cys), phosphorus uptake and regulation (pho, pst) and polyphosphate accumulation (ppk1). Likely performing osmoregulation using trk1 (K+ transporter) and proXV (Glycine betaine) and inferred to be motile (fliGMN, motAB gene). Based on the genome reporting standards for MAGs , the estimated completeness was 93.58%, contamination 1.79%, and the presence of the 5S (106bp), 16S (1,551 bp), and 23S (2,877 bp) rRNA gene and 42 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 3Mbps.
Eutrophocola NCBI Assembly: GCA_038147195.1 Ts seqco.de/i:46744
Species Salsuginivita brisbanensisTs [bris.ban.en'sis] N.L. fem. adj. brisbanensis, of or belonging to Brisbane
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Mucin, Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Capable of nitrate uptake (NRT2), phosphorus uptake and regulation (pho, pst), polyphosphate accumulation (ppk1) and noted absence of osmoregulation genes. Based on the genome reporting standards for MAGs , the estimated completeness was 98.63%, contamination 0%, and the presence of the 16S (1,555 bp), and 23S (2, 882bp) rRNA gene and 46 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 2.5Mbps.
Salsuginivita NCBI Assembly: GCA_038144975.1 Ts seqco.de/i:46749
Species Eutrophomonas brisbanensisTs [bris.ban.en'sis] N.L. fem. adj. brisbanensis, of or belonging to Brisbane
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Encodes genes for urea uptake and degradation (ureABC, urtABCDE), phosphorus uptake and regulation (pho, pst), pyrroquinoline quinone (pqqC), nitrate uptake (NRT2), thiosulfate oxidation (sox) and sulphate assimilation (cys). There is noted absence of osmoregulation genes. Based on the genome reporting standards for MAGs , the estimated completeness 98.78%, contamination 0%, and the presence of the 16S (1,532 bp), and 23S (2, 933 bp) rRNA gene and 40 tRNAs. Type genome is defined as “high-quality” draft MAG, with one contig and genome size of 2.1 Mbps.
Eutrophomonas NCBI Assembly: GCA_038141705.1 Ts seqco.de/i:46738
Species Salivita marinaTs [ma.ri'na] L. fem. adj. marina, of the sea, marine
Inferred to break down a wide range of organic carbon substrates (Chitin, Mucin, Xylan, Cellulose and Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Encodes genes for nitrate uptake (NRT2), thiosulfate oxidation (soxABCDXYZ), sulphate assimilation (cys), phosphorus uptake and regulation (pho, pst), polyphosphate kinase and phosphatase (ppa). Can perform osmoregulation (trkA, nqrF, nhaC) and is possibly motile (fliGMN, motAB). Based on the genome reporting standards for MAGs , the estimated completeness was 91.02%, contamination 1.36%, and the presence of the 5S (110bp), 16S (1,532 bp), and 23S (2,880 bp) rRNA gene and 42 tRNAs. Type genome is defined as “high-quality” draft MAG, with genome size of 3.3Mbps.
Salivita NCBI Assembly: GCA_038144425.1 Ts seqco.de/i:46742
Species Eutrophosalina marinaTs [ma.ri'na] L. fem. adj. marina, of the sea, marine
Inferred to be marine ecotype, and can break down a wide range of organic carbon substrates (Chitin, Pectin, Mucin, Cellulose, Sulfated polysaccharides and Starch). Also carries a polyphosphate kinase gene for polyphosphate accumulation, likely fuelling cytochrome c oxidase (coxABCD). Can perform osmoregulation using trk1 (K+ transporter) and nqrF (Na+ transporter). Based on the genome reporting standards for MAGs, the estimated completeness was 96.32%, contamination 0%, and the presence of the 16S (1,522 bp), and 23S (2,775 bp) rRNA gene and 34 tRNAs. Type genome is defined as “high-quality” draft MAG, having two contigs and a genome size of 1.5Mbps.
Eutrophosalina NCBI Assembly: GCA_038147175.1 Ts seqco.de/i:46729
Species Nitrosopumilus brisbanensis [bris.ban.en'sis] N.L. masc. adj. brisbanensis, of or belonging to Brisbane
Based on the genome reporting standards for MAGs, the estimated completeness was 98.63%, contamination 0%, and the presence of the %S (111 bp), 16S (1,464 bp), and 23S (3,117 bp) rRNA gene and 43 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 1.3Mbps
Nitrosopumilus NCBI Assembly: GCA_038152885.1 Ts seqco.de/i:46747
Species Marisalimonas marinaTs [ma.ri'na] L. fem. adj. marina, of the sea, marine
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Mucin and Starch) as well as fix inorganic carbon via the Calvin cyle (rbcLS). Capable of nitrate (NRT2), sulphate (ssu) and phosphorus uptake (pst, pho) and regulation, as well as osmoregulate via multiple genes (trkA, nqrF, mnh, proXV). Could have possible motility using motAB and fliGMN genes. Based on the genome reporting standards for MAGs, the estimated completeness 91.69%, contamination 0.14%, and the presence of the 5S (109 bp), 16S (1,482 bp), and 23S (2,712 bp) rRNA gene and 32 tRNAs. Type genome is defined as “high-quality” draft MAG, with six contigs, genome size of 1.9Mbps.
Marisalimonas NCBI Assembly: GCA_038131365.1 Ts seqco.de/i:46735
Species Eutrophovita brisbanensisTs [bris.ba.nen'sis] N.L. fem. adj. brisbanensis, of or belonging to Brisbane
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Encodes genes for urea uptake and degradation (ureABC, urtABCDE), phosphorus uptake and regulation (pho, pst), polyphosphate kinase (ppk1), pyrroquinoline quinone (pqqC), thiosulfate oxidation (sox) and sulphate assimilation (cys). Based on the genome reporting standards for MAGs , the estimated completeness 92.77%, contamination 0.61%, and the presence of the 16S (1,532 bp), and 23S (2,933 bp) rRNA gene and 37 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 2.1 Mbps.
Eutrophovita NCBI Assembly: GCA_038147395.1 Ts seqco.de/i:46740
Species Australimonas brisbanensisTs [bris.ban.en'sis] N.L. fem. adj. brisbanensis, of or belonging to Brisbane
This is a novel group of the order and family UBA2963. Inferred to degrade Mucin, and carry genes for phosphate and phosphonate transporters. Can perform osmoregulation using trkA (K+ transporter) and multicomponent Na+/H+ transportation (mnh). Based on the genome reporting standards for MAGs, the estimated completeness was 98.68%, contamination 0%, and the presence of the 16S (1,472 bp), and 23S (2,898 bp) rRNA gene and 46 tRNAs. Type genome is defined as “high-quality” draft MAG, and a genome size of 1.9Mbps.
Australimonas NCBI Assembly: GCA_038147155.1 Ts seqco.de/i:46731
Species Eutrophobius brisbanensisTs [bris.ban.en'sis] N.L. masc. adj. brisbanensis, of or belonging to Brisbane
Inferred to break down a Chitin and Cellulose as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Likely performing sulfate assimilation (cys), polyphosphate accumulation (ppk1) and osmoregulation (trkA, nqrF, mnh). Based on the genome reporting standards for MAGs , the estimated completeness was 98.24%, contamination 0.88%, and the presence of the 5S (110bp), 16S (1.540 bp), and 23S (2,877 bp) rRNA gene and 46 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 2.7Mbps.
Eutrophobius NCBI Assembly: GCA_038131795.1 Ts seqco.de/i:46746
Species Salinivivens marinusTs [ma.ri'nus] L. masc. adj. marinus, of the sea
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch). Capable of performing aerobic anoxygenic photosynthesis (pufLM), and thiosulfate oxidation (soxABCDXYZ), likely performing osmoregulation using trk1 (K+ transporter) and proXV (Glycine betaine) and inferred to be motile (fliGMN, motAB gene). Also carries genes for phosphorus uptake and regulation(pho, pst). Based on the genome reporting standards for MAGs , the estimated completeness 94.41%, contamination 0.3%, and the presence of the 5S (108 bp), 16S (1,457 bp), and 23S (2, 718bp) rRNA gene and 32 tRNAs. Type genome is defined as “high-quality” draft MAG, with genome size of 2.6 Mbps
Salinivivens NCBI Assembly: GCA_038142605.1 Ts seqco.de/i:46736