SeqCode Registry
Register List https://seqco.de/r:x3m88du8 [2024]

Register list for 16 new names including Fervidibacteria classis nov.

Submitted by Palmer, Marike

Class Fervidibacteria

Etymology
[Fer.vi.di.bac.ter'i.a] N.L. masc. n. Fervidibacter, referring to the type genus Fervidibacter; -ia, ending to denote a class; N.L. neut. pl. n. Fervidibacteria, the Fervidibacter class
Nomenclatural type
Genus Fervidibacter
Description
The description for the class is the same as for the order Fervidibacterales. Phylogenomic placement of this lineage within the Armatimonadota and relative evolutionary divergence supports delineation of this lineage as a class within the Armatimonadota.
Classification
Bacteria » Armatimonadota » Fervidibacteria
References
Effective publication: Nou et al., 2024 [1]

Order Fervidibacterales

Etymology
[Fer.vi.di.bac.ter.a'les] N.L. masc. n. Fervidibacter, referring to the type genus Fervidibacter; -ales, ending to denote an order; N.L. fem. pl. n. Fervidibacterales, the Fervidibacter order
Nomenclatural type
Genus Fervidibacter
Description
Members of the order are aerobic or anaerobic, with both high- and low-affinity terminal oxidases present in the aerobic Fervidibacterales. All members are likely polysaccharide degraders as numerous carbohydrate active enzymes are found in all members of the order. Phylogenomics and relative evolutionary divergence places this order in the class Fervidibacteria.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales
References
Effective publication: Nou et al., 2024 [1]

Family Thermosaccharophagaceae

Etymology
[Ther.mo.sac.cha.ro.pha.ga'ce.ae] N.L. masc. n. Thermosaccharophagus, type genus of the family; aceae, ending to denote a family; N.L. fem. pl. n. Thermosaccharophagaceae, the family of the genus Thermosaccharophagus
Nomenclatural type
Genus Thermosaccharophagus
Description
The description for the family is the same as for the genus Thermosaccharophagus. Phylogenomic placement of this lineage and relative evolutionary divergence supports delineation of this group as a family within the Fervidibacterales.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae
References
Effective publication: Nou et al., 2024 [1]

Family Fervidibacteraceae

Etymology
[Fer.vi.di.bac.ter.a'ce.ae] N.L. masc. n. Fervidibacter, referring to the type genus Fervidibacter; -aceae, ending to denote a family; N.L. fem. pl. n. Fervidibacteraceae, the Fervidibacter family
Nomenclatural type
Genus Fervidibacter
Description
Most members of the family are aerobic, with both the high-affinity and low-affinity terminal oxidases present in the genomes. All members are likely polysaccharide-degrading with numerous carbohydrate-active enzymes encoded by genomes of the family. GC content in the family range between 49% and 59%. The oxidative pentose phosphate pathway and the tricarboxylic acid cycle are complete for the family.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae
References
Effective publication: Nou et al., 2024 [1]

Genus Caldisaccharidevorator

Etymology
[Cal.di.sac.cha.ri.de.vo.ra'tor] L. masc. adj. caldus, hot; L. neut. n. saccharum, sugar; L. masc. n. devorator, devourer; N.L. masc. n. Caldisaccharidevorator, hot sugar devourer
Nomenclatural type
Species Caldisaccharidevorator sinensisTs
Description
Genomes belonging to the genus have been recovered from metagenomic sequence data from thermal environments from Malaysia and China. GC content range between 55-57%. ANI and AAI values among members of the genus are incongruent, although ANI values > 75% are observed among the two species in the genus. Based on available genome data, the genus likely comprise aerobic polysaccharide-degrading species, with the low-affinity terminal oxidase (CoxABC) conserved in the genus. Approximately 100 glycoside hydrolases (GHs) are encoded by genomes in the genus with > 40 GH families represented. No hydrogenases were predicted for genomes belonging to this genus.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Caldisaccharidevorator
References
Effective publication: Nou et al., 2024 [1]

Genus Thermosaccharophagus

Etymology
[Ther.mo.sac.cha.ro.pha'gus] Gr. fem. adj. therme, heat; Gr. neut. n. sakchar, sugar; Gr. masc. adj. suff. phagos, eater; N.L. masc. n. Thermosaccharophagus, eater of sugar in high temperatures
Nomenclatural type
Species Thermosaccharophagus gerlachensisTs
Description
Genomes belonging to the genus have been recovered from metagenomic sequence data from thermal environments in the USA and China. GC content range between 47% and 53%. ANI and AAI values among species are inconsistent, although all ANI values between species are below suggested species guidelines. Based on available genome data, the genus is strictly anaerobic. Between 64 and 105 glycoside hydrolases (GHs) are encoded by genomes of the genus, with > 25 GH families represented. Group 1a and 4b hydrogenases are conserved within the genus, suggesting hydrogen and formate metabolism in the genus. The core of the methyl-branch of the Wood-Ljungdahl pathway is conserved in the genus.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus
References
Effective publication: Nou et al., 2024 [1]

Genus Fervidibacter

Etymology
[Fer.vi.di.bac'ter] L. masc. adj. fervidus, hot, steaming; N.L. masc. n. bacter, a rod; N.L. masc. n. Fervidibacter, a hot rod
Nomenclatural type
Species Fervidibacter sacchariTs
Description
Genomes belonging to the genus have been recovered from metagenomic sequence data from thermal environments in Antarctica, Canada, China, Japan, and USA. GC content within the genus range between 49% to 59%. Phylogenomic congruence and relative evolutionary divergence along with ANI and AAI values support designation of this group as a genus. ANI values among species in the genus are below species delineation guidelines. Available genome data support members of the genus largely being aerobic or microaerophilic, with subunits of both the high-affinity and low-affinity terminal oxidases encoded within the genus. Numerous glycoside hydrolases are encoded by species in the genus, supporting a likely saccharolytic lifestyle for members of the genus.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter
References
Effective publication: Nou et al., 2024 [1]
Assigned taxonomically: Rinke et al., 2013 [2]

Species Thermosaccharophagus tengchongensis

Etymology
[teng.chong.en'sis] N.L. masc. adj. tengchongensis, of Tengchong, Yunnan province, south-west China, where this organism is from
Nomenclatural type
INSDC Nucleotide: JAVHTD000000000 Ts
Description
Genomes of this species were recovered from metagenomes from geothermal springs in Tengchong, China. GC content is approximately 52%. No terminal oxidases and the presence of the Wood-Ljundahl pathway indicate that this species is likely a strict anaerobe.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus » Thermosaccharophagus tengchongensis
References
Effective publication: Nou et al., 2024 [1]

Species Caldisaccharidevorator malaysiensis

Etymology
[ma.lay.si.en'sis] N.L. masc. adj. malaysiensis, of Malaysia, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_025057575.1 Ts
Description
The sole genome representative of this species was recovered from metagenomes of microbial mats in SKY hot spring, Malaysia. The GC content is 55%. Subunits of both the high- and low-affinity terminal oxidase are encoded by the genome.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Caldisaccharidevorator » Caldisaccharidevorator malaysiensis
References
Effective publication: Nou et al., 2024 [1]

Species Fervidibacter sinensis

Etymology
[si.nen'sis] N.L. masc. adj. sinensis, of China, the country where this organism is from
Nomenclatural type
INSDC Nucleotide: JAVHTH000000000 Ts
Description
Genomes of this species were recovered from metagenomes from geothermal springs in Tengchong, China. GC content range between 50% and 52%. The a subunit of the high-affinity cytochrome bd ubiquinol oxidase (CydA) are encoded by the genomes of the species, but no low-affinity terminal oxidases are encoded.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter sinensis
References
Effective publication: Nou et al., 2024 [1]

Species Caldisaccharidevorator sinensisTs

Etymology
[si.nen'sis] N.L. masc. adj. sinensis, of China, the country where this organism is from
Nomenclatural type
INSDC Nucleotide: JAVKTG000000000 Ts
Description
Genomes of this species were recovered from metagenomes from the geothermal spring Qiao Quan, in Tengchong, China. The GC content is approximately 56%. The low-affinity terminal oxidase CoxABC is encoded by genomes of the species.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Caldisaccharidevorator » Caldisaccharidevorator sinensisTs
References
Effective publication: Nou et al., 2024 [1]

Species Fervidibacter sacchariTs

Etymology
[sac'cha.ri] N.L. gen. n. sacchari, of sugar
Nomenclatural type
NCBI Assembly: GCA_030520105.1 Ts
Reference Strain
PD1 = JCM 39283 = DSM 113467
Description
Hyperthermophilic, microaerophilic, facultatively anaerobic, and grows chemoheterotrophically on monosaccharides and polysaccharides. Cells are ovoid- to rod-shaped, Gram-stain negative, and are 0.9-1.3 µm in width and 1.6-3.6 µm in length. Grows between 65 and 87.5 °C and an optimum temperature of 80 °C, and a pH range of 6.5-8.6 with an optimum pH of 7.5. Grows at an optimum O2 concentration of 5-10%. Grows on D-arabinose, D-galactose, D-glucose, D-rhamnose, D-ribose, D-xylose, chondroitin sulfate, colloidal chitin, galactan, gellan gum, guar gum, karaya gum, locust bean gum, xantham gum, xyloglucan, β-glucan, glycogen, starch, AFEX-pretreated corn stover, miscanthus, sugarcane bagasse, acetate and casamino acids. Grows weakly on xyloglucan under fermentation conditions. The major fatty acids (> 10%) are C16:0, C18:0 and/or cyclo-C17:0, and iso-C16:0. The major respiratory quinones (> 10%) are MK-8 and MK-9. The isolate and genomes of the species have been recovered from geothermal springs in the Great Basin, Nevada, USA. GC content of genomes range between 51-52%. Subunits for both the high-affinity and low-affinity terminal oxidases are encoded in the genomes. Genomes also encode a Group 3d [NiFe] hydrogenase, which produces hydrogen as an electron sink for NAD+ regeneration.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter sacchariTs
References
Effective publication: Nou et al., 2024 [1]
Assigned taxonomically: Rinke et al., 2013 [2]

Species Thermosaccharophagus yellowstonensis

Etymology
[yel.low.ston.en'sis] N.L. masc. adj. yellowstonensis, of Yellowstone, USA, where this organism is from
Nomenclatural type
NCBI Assembly: GCA_041537945.1 Ts
Description
The sole genome representative of the species was recovered from a metagenomes from Washburn Spring, Yellowstone National Park, Wyoming, USA. GC content is 51%. No terminal oxidases and the presence of the Wood-Ljundahl pathway indicate that this species is likely a strict anaerobe.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus » Thermosaccharophagus yellowstonensis
References
Effective publication: Nou et al., 2024 [1]

Species Fervidibacter canadensis

Etymology
[ca.na.den'sis] N.L. masc. adj. canadensis, of Canada, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_041446545.1 Ts
Description
Genomes of this species were recovered from metagenomes from the geothermal Dewar Creek, British Columbia, Canada. GC content of genomes were approximately 57%. Subunits for both the high-affinity and low-affinity terminal oxidases are encoded in the genomes. The high-affinity respiratory H2-uptake [NiFe] group 1h hydrogenases are encoded by genomes of the species, likely fueling respiration during carbon starvation.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter canadensis
References
Effective publication: Nou et al., 2024 [1]

Species Thermosaccharophagus gerlachensisTs

Etymology
[ger.lach.en'sis] N.L. masc. adj. gerlachensis, of Gerlach, the region where Great Boiling Spring is located in Nevada, where this organism is from
Nomenclatural type
NCBI Assembly: GCA_041538025.1 Ts
Description
The sole genome representative for the species was recovered from a metagenome from Great Boiling Spring, Gerlach, Nevada, USA. GC content is 47%. No terminal oxidases are encoded by this genome, and the presence of the Wood-Ljungdahl pathway likely indicates this species is a strict anaerobe. Genes encoding a group 4d hydrogenase is present in multiple copies.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus » Thermosaccharophagus gerlachensisTs
References
Effective publication: Nou et al., 2024 [1]

Species Fervidibacter japonicus

Etymology
[ja.po.ni'cus] N.L. masc. adj. japonicus, of Japan, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_002898575.1 Ts
Description
The sole genome representative of this species was recovered from a metagenome from Hishikari Mine, Japan. The GC content if 59%. The genome encodes both the high- and low-affinity terminal oxidases.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter japonicus
References
Effective publication: Nou et al., 2024 [1]

References

  1. Nou et al. (2024). Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota. Nature Communications. DOI:10.1038/s41467-024-53784-3
  2. Rinke et al. (2013). Insights into the phylogeny and coding potential of microbial dark matter. Nature. DOI:10.1038/nature12352

Register List Certificate of Validation

On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:x3m88du8 submitted by Palmer, Marike and including 16 new names has been successfully validated.


Date of Priority: 2024-11-20 02:57 UTC
DOI: 10.57973/seqcode.r:x3m88du8