Genome sc|0000100

Genomics

Accession

NCBI Assembly:GCA_001805815.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.18% (automated estimate: 92.5%)
• Contamination: 1.82% (automated estimate: 1.9%)
• Quality: 89.08 (automated estimate: 83.0)

Ribosomal and transfer RNA genes

• 0 16S rRNAs (automated estimate: 2)
• 1 23S rRNA (up to 100.0%) (automated estimate: 2)
• tRNAs for 19 amino acids (automated estimate: 19)

Sequencing depth

15.99 ×

Source

• BioSample: SAMN04316059

Other features

• G+C Content: 63.15% (automated estimate: 63.14%)
• Coding Density: 93.74%
• Codon Table: 11
• N50: 47,310 bp
• Contigs: 62
• Largest Contig: 102,786 bp
• Assembly Length: 1,702,408 bp
• Ambiguous Assembly Fraction: 0.3%

Submitter comments

Genome completeness estimates were determined with CheckM2 and by manually removing the systematically absent markers across the phylum from the CheckM1 marker set. This resulted in an increased completeness estimate compared to automated completeness estimates with the standard bacterial marker set via the CheckM1 pipeline.

Automated checks

Complete

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Last modified 11 months ago