Genome sc|0000128

Name

“Profunditerraquicola sanfordiae”

Database

NCBI Assembly

Accession

GCA_003598025.1

Genomics

Accession

NCBI Assembly:GCA_003598025.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 95.96%
Contamination: 0.35%
Quality: 94.21

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids

Sequencing depth

20.0 ×

Source

Other features

G+C Content: 41.02%
Coding Density: 94.57%
Codon Table: 11
N50: 408,832 bp
Contigs: 10
Largest Contig: 567,377 bp
Assembly Length: 1,687,747 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates as determined with CheckM v2.

Automated checks

Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries

Date

Collection Date: 2013-10 • 2013-10-10

Location

Lat Lon: 44.352157 N 103.750503 W

Toponym

Geo Loc Name: USA: South Dakota, Sanford Underground Research Facility

Environment

Sample Type: metagenomic assembly

Isolation Source: deeply circulating subsurface aquifer fluids • Deep subsurface aquifer fluid • deep subsurface aquifer fluid

Other

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

Metadata retrieved about 1 month ago

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