SeqCode Registry
cognitis nomina
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Genomes
sc|0001342
JSON
Genome sc|0001342
Database
NCBI Assembly
Accession
GCA_031266185.1
Genomics
Accession
NCBI Assembly:
GCA_031266185.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
59.55%
(automated estimate: 74.5%)
Contamination:
0.0%
(automated estimate: 2.8%)
Quality:
59.55
(automated estimate: 60.5)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 16.0%)
(automated estimate: 0)
1 23S rRNA (up to 16.0%)
(automated estimate: 0)
tRNAs for 16 amino acids
(automated estimate: 17)
Sequencing depth
60.0 ×
Source
BioSample: SAMN21241499
Other features
G+C Content:
31.0%
(automated estimate: 31.69%)
Coding Density:
87.89%
Codon Table:
11
N50:
41,830 bp
Contigs:
28
Largest Contig:
114,027 bp
Assembly Length:
827,877 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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