Genome sc|0001343

Genomics

Accession

NCBI Assembly:GCA_031267715.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.76% (automated estimate: 92.5%)
• Contamination: 0.0% (automated estimate: 0.0%)
• Quality: 91.76 (automated estimate: 92.5)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 0.0%) (automated estimate: 1)
• 0 23S rRNAs (automated estimate: 0)
• tRNAs for 19 amino acids (automated estimate: 20)

Sequencing depth

92.0 ×

Source

• BioSample: SAMN21241425
• BioSample: SAMN19322076

Other features

• G+C Content: 33.5% (automated estimate: 33.52%)
• Coding Density: 78.34%
• Codon Table: 11
• N50: 592,480 bp
• Contigs: 2
• Largest Contig: 592,480 bp
• Assembly Length: 758,044 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The 16S fragment in the MAG is a contamination from another verrucomicrobial MAG from the same metagenome.

Automated checks

Complete

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Last modified 11 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21241425
• BioSample: SAMN19322076

Date

Collection Date: 2013-11-14

Location

Lat Lon: 19.399181 N 101.000213 E

Toponym

Geo Loc Name: Thailand: Thung Chang

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Glyptotermes sp.

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21241425: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
• SAMN19322076: Termite gut metagenome of Glyptotermes sp. from Thung Chang, Thailand - Gsp477

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Metadata retrieved 12 months ago