SeqCode Registry
cognitis nomina
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Genomes
sc|0001360
JSON
Genome sc|0001360
Database
NCBI Assembly
Accession
GCA_031289555.1
Genomics
Accession
NCBI Assembly:
GCA_031289555.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
60.11%
(automated estimate: 61.3%)
Contamination:
4.49%
(automated estimate: 0.0%)
Quality:
37.66
(automated estimate: 61.3)
Ribosomal and transfer RNA genes
0 16S rRNAs
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 15 amino acids
(automated estimate: 15)
Sequencing depth
60.0 ×
Source
BioSample: SAMN21242534
Other features
G+C Content:
35.3%
(automated estimate: 35.27%)
Coding Density:
90.76%
Codon Table:
11
N50:
5,343 bp
Contigs:
310
Largest Contig:
21,577 bp
Assembly Length:
1,546,455 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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