SeqCode Registry
cognitis nomina
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Genomes
sc|0001367
JSON
Genome sc|0001367
Database
INSDC Nucleotide
Accession
SUB13799702
Genomics
Accession
INSDC Nucleotide:
SUB13799702
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
2048.0 ×
Source
BioSample: SAMN37319669
Other features
G+C Content:
34.1%
Automated checks
Failed: Cannot find ncbi:nuccore:SUB13799702
Last modified
10 months ago
Sample Metadata
BioSample entries
BioSample: SAMN37319669
Date
Collection Date:
2021-08-29
Location
Lat Lon:
22.39 S 40.26 W
Toponym
Geo Loc Name:
Brazil: Campos Basin, South Atlantic
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Sponge tissue
Env Broad Scale:
ENVO:00002030
Env Local Scale:
ENVO:00000447
Env Medium:
ENVO:00010483
Other
Not detected
Package
Ncbi Submission Package:
MIMAG.host-associated.6.0
Biosamplemodel:
MIMAG.host-associated
Additional Accessions
SAMN37217578
Append as BioSamples
All retrieved samples
SAMN37319669
: MIMAG Metagenome-assembled Genome sample from Nitrosopumilaceae archaeon AB1(1)
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37319669
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2021-08-29
organism
Nitrosopumilaceae archaeon AB1(1)
env_broad_scale
ENVO:00002030
metagenomic
TRUE
sample_type
metagenomic assembly
environmental-sample
TRUE
env_local_scale
ENVO:00000447
metagenome-source
sponge metagenome
isolate
AB1(1)
NCBI submission package
MIMAG.host-associated.6.0
geo_loc_name
Brazil: Campos Basin, South Atlantic
env_medium
ENVO:00010483
lat_lon
22.39 S 40.26 W
isolation_source
Sponge tissue
sample derived-from
SAMN37217578
BioSampleModel
MIMAG.host-associated
ENA-FIRST-PUBLIC
2023-11-02
ENA-LAST-UPDATE
2023-11-02
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