SeqCode Registry
cognitis nomina
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Genomes
sc|0001369
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Genome sc|0001369
Database
NCBI Assembly
Accession
GCA_029852955.1, GCA_029852895.1, GCA_029852935.1, GCA_029852885.1, GCA_029852815.1, GCA_029852835.1, GCA_029852845.1, GCA_029851065.1, GCA_029851105.1, GCA_029851145.1, GCA_029851185.1, GCA_029851225.1, GCA_029851245.1, GCA_029851265.1, GCA_029851285.1, GCA_029851305.1, GCA_029851325.1, GCA_029851345.1, GCA_029851365.1, GCA_029851385.1
Genomics
Accession
NCBI Assembly:
GCA_029852955.1
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GCA_029852895.1
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GCA_029852935.1
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GCA_029852885.1
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GCA_029852815.1
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GCA_029852835.1
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GCA_029852845.1
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GCA_029851065.1
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GCA_029851105.1
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GCA_029851145.1
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GCA_029851185.1
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GCA_029851225.1
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GCA_029851245.1
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GCA_029851265.1
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GCA_029851285.1
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GCA_029851305.1
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GCA_029851325.1
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GCA_029851345.1
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GCA_029851365.1
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GCA_029851385.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
242.0 ×
Source
BioSample: SAMN28700317
Other features
G+C Content:
16.0%
Automated checks
Failed: Genome processing bypassed: Inactive: Low quality genome
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN28700317
Date
Collection Date:
2014
Location
Not detected
Toponym
Geo Loc Name:
Germany: Berlin
Environment
Sample Type:
metagenomic assembly
Isolation Source:
beetle abdomen
Other
Host:
Dinoderus porcellus
Package
Ncbi Submission Package:
MIMAG.6.0
Biosamplemodel:
MIMAG
All retrieved samples
SAMN28700317
: MIMAG Metagenome-assembled Genome sample from Candidatus Shikimatogenerans bostrichidophilus
Metadata retrieved
12 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN28700317
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2014
isolate
DPOR1
NCBI submission package
MIMAG.6.0
metagenome_source
insect metagenome
organism
Candidatus Shikimatogenerans bostrichidophilus
environmental_sample
true
host
Dinoderus porcellus
metagenomic
true
geo_loc_name
Germany: Berlin
sample_type
metagenomic assembly
isolation_source
beetle abdomen
BioSampleModel
MIMAG
ENA-FIRST-PUBLIC
2022-12-09
ENA-LAST-UPDATE
2023-04-24
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