JSON

Genome sc|0001405

Name

“Mesorhizobium nourii”

Database

NCBI Assembly

Accession

GCA_024297145.1

Genomics

Accession
NCBI Assembly:GCA_024297145.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.51%
  • Contamination: 0.96%
  • Quality: 94.71
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
101.814 ×
Source
Other features
  • G+C Content: 62.17%
  • Coding Density: 86.36%
  • Codon Table: 11
  • N50: 358,194 bp
  • Contigs: 72
  • Largest Contig: 772,937 bp
  • Assembly Length: 5,984,964 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Most of the statistic were run using bbtools and QUAST. Specifically for the completeness and contamination was determined using CheckM. Finally the amino acid were determined by trnascan.
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: na
Location
Not detected
Toponym
Geo Loc Name: India
Environment
Sample Type: Cell culture
Isolation Source: nodules
Other
Host: Cicer arietinum
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 11 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license