JSON

Genome sc|0001490

Database

NCBI Assembly

Accession

GCA_005788175.1

Genomics

Accession
NCBI Assembly:GCA_005788175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 78.07% (automated estimate: 84.9%)
  • Contamination: 1.32% (automated estimate: 0.9%)
  • Quality: 71.47 (automated estimate: 80.4)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 43.5% (automated estimate: 43.46%)
  • Coding Density: 94.55%
  • Codon Table: 11
  • N50: 233,378 bp
  • Contigs: 16
  • Largest Contig: 278,026 bp
  • Assembly Length: 893,751 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-12-25
Location
Lat Lon: 24.541 N 102.895 E
Toponym
Geo Loc Name: China: Fuxian Lake, Yuxi
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater • freshwater sample F1-20
Other
Temp: 535 • 1
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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