Genome sc|0001514

Genomics

Accession

INSDC Nucleotide:CP117180.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.8%
• Contamination: 0.0%
• Quality: 99.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

222.0 ×

Source

• BioSample: SAMN15924605

Other features

• G+C Content: 43.3%
• Coding Density: 96.19%
• Codon Table: 11
• N50: 1,692,950 bp
• Contigs: 1
• Largest Contig: 1,692,950 bp
• Assembly Length: 1,692,950 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

A hybrid assembly was generated from ONT MinION sequence reads and Illumina sequence reads in SPAdes v. 3.14.1. The recovered genome was fully assembled to a single, closed replicon. Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0. 

Automated checks

Complete

---

Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN15924605

Date

Collection Date: 2013-07

Location

Lat Lon: 24.95093 N 98.43626 E

Toponym

Geo Loc Name: China: Rehai Geothermal Field, Tengchong

Environment

Isolation Source: geothermal spring water

Env Broad Scale: ENVO:01001227

Env Local Scale: geothermal spring

Env Medium: geothermal spring water

Other

Depth: 0.5 m

Package

Ncbi Submission Package: MIGS.ba.microbial.5.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN15924605: MIGS Cultured Bacterial/Archaeal sample from Hydrogenobacter sp. T-2

---

Metadata retrieved 10 months ago