Genome sc|0001515

Genomics

Accession

INSDC Nucleotide:CP048795.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.81%
• Quality: 95.95

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

379.0 ×

Source

• BioSample: SAMN14057017

Other features

• G+C Content: 44.0%
• Coding Density: 96.42%
• Codon Table: 11
• N50: 1,805,917 bp
• Contigs: 1
• Largest Contig: 1,805,917 bp
• Assembly Length: 1,805,917 bp
• Ambiguous Assembly Fraction: 0.0055%

Submitter comments

A hybrid assembly was generated from ONT MinION sequence reads and Illumina sequence reads in Unicycler, implemented in Galaxy. The recovered genome was fully assembled to a single, closed replicon. Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0. 

Automated checks

Complete

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Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN14057017

Date

Collection Date: 2013-07-04

Location

Lat Lon: 24.95044 N 98.43650 E

Toponym

Geo Loc Name: China: Rehai Geothermal Field, Tengchong

Environment

Env Broad Scale: ENVO:01001227

Env Local Scale: geothermal spring

Env Medium: geothermal spring water

Other

Ph: 6.36

Depth: 0.5 m

Temp: 74.6 C

Rel To Oxygen: microaerophilic

Package

Ncbi Submission Package: MIGS.ba.water.5.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN14057017: MIGS Cultured Bacterial/Archaeal sample from Hydrogenobacter sp. T-8

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Metadata retrieved 10 months ago