JSON

Genome sc|0001528

Database

NCBI Assembly

Accession

GCA_031459295.1

Genomics

Accession
NCBI Assembly:GCA_031459295.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.28% (automated estimate: 91.5%)
  • Contamination: 0.99% (automated estimate: 0.9%)
  • Quality: 87.33 (automated estimate: 87.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 73.21%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 73.21%
  • Coding Density: 91.48%
  • Codon Table: 11
  • N50: 111,921 bp
  • Contigs: 42
  • Largest Contig: 225,229 bp
  • Assembly Length: 2,839,191 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2019-07
Location
Lat Lon: 25.44 N 98.46 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, JZ-2
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN35165532 Append as BioSamples
All retrieved samples
Metadata retrieved 5 months ago


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