Genome sc|0001533

Database

NCBI Assembly

Accession

GCA_031459875.1

Genomics

Accession

NCBI Assembly:GCA_031459875.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 89.81% (automated estimate: 90.6%)
Contamination: 0.19% (automated estimate: 0.0%)
Quality: 88.86 (automated estimate: 90.6)

Ribosomal and transfer RNA genes

2 16S rRNAs (up to 43.0%)
1 23S rRNA (up to 35.0%)
tRNAs for 21 amino acids

Sequencing depth

100.0 ×

Source

Other features

G+C Content: 70.09%
Coding Density: 92.82%
Codon Table: 11
N50: 77,862 bp
Contigs: 67
Largest Contig: 311,717 bp
Assembly Length: 3,053,559 bp
Ambiguous Assembly Fraction: 0.0013%

Automated checks

Complete

Last modified 8 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-03

Location

Lat Lon: 24.92 N 98.34 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, HHBFW-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • HHBFW-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

Metadata retrieved 8 months ago

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