Genome sc|0001534

Database

NCBI Assembly

Accession

GCA_031459465.1

Genomics

Accession

NCBI Assembly:GCA_031459465.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 83.33% (automated estimate: 86.8%)
Contamination: 2.61% (automated estimate: 0.0%)
Quality: 70.28 (automated estimate: 86.8)

Ribosomal and transfer RNA genes

0 16S rRNAs
1 23S rRNA (up to 37.0%)
tRNAs for 21 amino acids

Sequencing depth

100.0 ×

Source

Other features

G+C Content: 69.96%
Coding Density: 92.45%
Codon Table: 11
N50: 33,539 bp
Contigs: 138
Largest Contig: 82,043 bp
Assembly Length: 3,128,332 bp
Ambiguous Assembly Fraction: 0.006%

Automated checks

Complete

Last modified 8 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-08

Location

Lat Lon: 25.44 N 98.46 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, JZ-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • JZ-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

Metadata retrieved 8 months ago

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