SeqCode Registry
cognitis nomina
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Genomes
sc|0001535
JSON
Genome sc|0001535
Database
NCBI Assembly
Accession
GCA_011046845.1
Genomics
Accession
NCBI Assembly:
GCA_011046845.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.06%
Contamination:
4.2%
Quality:
72.06
Sequencing depth
52.0 ×
Source
BioSample: SAMN09639438
Other features
G+C Content:
68.94%
Automated checks
Failed: Genome processing bypassed: Inactive: Too many errors in step cds
Last modified
10 months ago
Sample Metadata
BioSample entries
BioSample: SAMN09639438
Date
Collection Date:
2012-10-01
Location
Lat Lon:
60.1987 N 125.5127 W
Toponym
Geo Loc Name:
Canada: British Columbia
Environment
Sample Type:
metagenomic assembly
Isolation Source:
hot spring sediment
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN09639438
: Microbe sample from Bacillota bacterium
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09639438
×
subsource_note
Metagenome-assembled genome binned from sequencing reads available in SRR5581334
collection_date
2012-10-01
INSDC secondary accession
SRS3561545
organism
Bacillota bacterium
metagenomic
true
sample_type
metagenomic assembly
environmental-sample
true
metagenome-source
sediment metagenome
contamination_estimated
1.6
isolate
SpSt-351
NCBI submission package
Microbe.1.0
genome_coverage
51.96
mapping_method_and_version
Bowtie 2 v2.2.8
geo_loc_name
Canada: British Columbia
assembly_method_and_version
DOE-JGI IMG deposited assembly (IMG Genome ID: 3300006865)
lat_lon
60.1987 N 125.5127 W
completeness_estimated
93.98
quality_assessment_method_and_version
CheckM v1.0.7
isolation_source
hot spring sediment
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-01-01
ENA-LAST-UPDATE
2023-03-13
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