JSON

Genome sc|0001541

Database

NCBI Assembly

Accession

GCA_031458735.1

Genomics

Accession
NCBI Assembly:GCA_031458735.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.2% (automated estimate: 90.6%)
  • Contamination: 2.78% (automated estimate: 0.9%)
  • Quality: 77.3 (automated estimate: 86.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 29.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 69.41% (automated estimate: 69.38%)
  • Coding Density: 94.5%
  • Codon Table: 11
  • N50: 121,152 bp
  • Contigs: 31
  • Largest Contig: 237,828 bp
  • Assembly Length: 2,430,881 bp
  • Ambiguous Assembly Fraction: 0.032%
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-05
Location
Lat Lon: 24.95 N 98.44 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, QQ
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN35165540 Append as BioSamples
All retrieved samples
Metadata retrieved 10 months ago


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