SeqCode Registry
cognitis nomina
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Genomes
sc|0001573
JSON
Genome sc|0001573
Database
NCBI Assembly
Accession
CP017686
Genomics
Accession
NCBI Assembly:
CP017686
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN05892231
Other features
G+C Content:
55.5%
Automated checks
Failed: Cannot find ncbi:assembly:CP017686
Last modified
10 months ago
Sample Metadata
BioSample entries
BioSample: SAMN05892231
Date
Collection Date:
2012
Location
Not detected
Toponym
Geo Loc Name:
France
Environment
Sample Type:
cell culture
Other
Host:
Homo sapiens
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN05892231
: Microbe sample from Methanomethylophilus alvi
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN05892231
×
strain
Mx-05
collection_date
2012
type-material
type strain of Methanomethylophilus alvi
NCBI submission package
Microbe.1.0
organism
Methanomethylophilus alvi
host
Homo sapiens
geo_loc_name
France
sample_type
cell culture
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2017-11-01
ENA-LAST-UPDATE
2023-11-26
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