SeqCode Registry
cognitis nomina
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Genomes
sc|0001574
JSON
Genome sc|0001574
Database
NCBI Assembly
Accession
GCA_031458615.1
Genomics
Accession
NCBI Assembly:
GCA_031458615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.44%
(automated estimate: 95.3%)
Contamination:
2.47%
(automated estimate: 2.8%)
Quality:
82.09
(automated estimate: 81.3)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 45.0%)
0 23S rRNAs
tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN35168785
Other features
G+C Content:
69.4%
(automated estimate: 69.4%)
Coding Density:
94.68%
Codon Table:
11
N50:
63,863 bp
Contigs:
57
Largest Contig:
170,049 bp
Assembly Length:
2,471,848 bp
Ambiguous Assembly Fraction:
0.00081%
Automated checks
Complete
Last modified
10 months ago
Sample Metadata
BioSample entries
BioSample: SAMN35168785
Date
Collection Date:
2018-08
Location
Lat Lon:
24.95 N 98.44 E
Toponym
Geo Loc Name:
China: Tengchong county, Yunnan, QQ
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Hot spring sediment
Env Broad Scale:
Hot spring
Env Local Scale:
Hot spring sediment
Env Medium:
Hot spring sediment
Other
Depth:
Surface
Package
Ncbi Submission Package:
MIMAG.sediment.6.0
Biosamplemodel:
MIMAG.sediment
Additional Accessions
SAMN35165543
Append as BioSamples
All retrieved samples
SAMN35168785
: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN35168785
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2018-08
organism
Armatimonadota bacterium
env_broad_scale
Hot spring
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the hot springs metagenome BioSample: SAMN35165543
environmental-sample
1
env_local_scale
Hot spring sediment
metagenome-source
hot springs metagenome
isolate
QQ_201808_bins_108
NCBI submission package
MIMAG.sediment.6.0
depth
Surface
elev
Unknown
geo_loc_name
China: Tengchong county, Yunnan, QQ
env_medium
Hot spring sediment
lat_lon
24.95 N 98.44 E
isolation_source
Hot spring sediment
sample-type
metagenomic assembly
BioSampleModel
MIMAG.sediment
ENA-FIRST-PUBLIC
2023-05-22
ENA-LAST-UPDATE
2023-09-06
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