JSON

Genome sc|0001574

Database

NCBI Assembly

Accession

GCA_031458615.1

Genomics

Accession
NCBI Assembly:GCA_031458615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.44% (automated estimate: 95.3%)
  • Contamination: 2.47% (automated estimate: 2.8%)
  • Quality: 82.09 (automated estimate: 81.3)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 45.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 69.4% (automated estimate: 69.4%)
  • Coding Density: 94.68%
  • Codon Table: 11
  • N50: 63,863 bp
  • Contigs: 57
  • Largest Contig: 170,049 bp
  • Assembly Length: 2,471,848 bp
  • Ambiguous Assembly Fraction: 0.00081%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-08
Location
Lat Lon: 24.95 N 98.44 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, QQ
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN35165543 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


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