SeqCode Registry
cognitis nomina
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Genomes
sc|0001578
JSON
Genome sc|0001578
Database
NCBI Assembly
Accession
SAMEA5404592
Genomics
Accession
NCBI Assembly:
SAMEA5404592
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.7%
Contamination:
2.2%
Quality:
81.7
Ribosomal and transfer RNA genes
3 16S rRNAs (unknown length)
Source
SRA: ERS3209907
Other features
G+C Content:
44.3%
Submitter comments
The GC content was assessed using anvio-8
Completeness and redundancy values were determined using checkM v1.1.3
The presence of tRNA elements was assessed using prokka v1.14.6
The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
Automated checks
Failed: Cannot find ncbi:assembly:SAMEA5404592
Last modified
9 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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