JSON

Genome sc|0001581

Database

INSDC Nucleotide

Accession

SAMEA5406578

Genomics

Accession
INSDC Nucleotide:SAMEA5406578
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.2%
  • Contamination: 0.0%
  • Quality: 94.2
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (unknown length)
Sequencing depth
12.43 ×
Source
Other features
  • G+C Content: 42.6%
Submitter comments
  • The GC content was assessed using anvio-8 
  • Completeness and redundancy values were determined using checkM v1.1.3
  • The presence of tRNA elements was assessed using prokka v1.14.6
  • The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
  • The sequencing depth of the MAG was assessed using samtools v1.17. Readmapping of the MAG was conducted against the metagenome from which it was recovered, and depth was determined using samtools coverage. The reported "mean depth" per contig was then averaged to get the depth of the entire MAG.
Automated checks
Failed: Cannot find ncbi:nuccore:SAMEA5406578

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 7 months ago


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