Genome sc|0001583

Genomics

Accession

NCBI Assembly:GCA_964187505.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.7%
• Contamination: 2.2%
• Quality: 81.7

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

17.13 ×

Source

• BioSample: SAMEA115711132

Other features

• G+C Content: 44.3%
• Coding Density: 94.28%
• Codon Table: 11
• N50: 12,102 bp
• Contigs: 231
• Largest Contig: 84,310 bp
• Assembly Length: 2,118,992 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

• The GC content was assessed using anvio-8 
• Completeness and redundancy values were determined using checkM v1.1.3
• The presence of tRNA elements was assessed using prokka v1.14.6
• The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
• The sequencing depth of the MAG was assessed using samtools v1.17. Readmapping of the MAG was conducted against the metagenome from which it was recovered, and depth was determined using samtools coverage. The reported "mean depth" per contig was then averaged to get the depth of the entire MAG

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2011-05-23

Location

Geographic Location Latitude: 54.18

Geographic Location Longitude: 7.90

Toponym

Geographic Location Country And Or Sea: North Sea

Environment

Broad Scale Environmental Context: marine biome

Local Environmental Context: marine pelagic biome

Environmental Medium: coastal sea water

Other

Depth: 1

Chlorophyll: 0.587

Package

Ena Checklist: ERC000024

All retrieved samples

• SAMEA115711132: 20110523_Bin_36_1

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Metadata retrieved 10 days ago