Genome sc|0001592

Genomics

Accession

INSDC Nucleotide:GCA_964014115

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.0%
• Contamination: 3.8%
• Quality: 75.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 41 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMEA115040709
• BioSample: SAMEA115040710
• And 4 more…

See all sources

Other features

• G+C Content: 62.0%

Submitter comments

The MAG was recovered from a co-assembly of the samples stated above. The tools used are mentioned below:

• The assembly was done with Flye-meta v2.9.1 
• The binning was done with MaxBin2 v2.2.7
• Completeness, contamination, and G+C content were assessed by CheckM v1.2.2
• 16S and 23S genes presence and completeness were assessed by barrnap v0.9
• tRNA were detected by DRAM v1.2.2

Automated checks

Failed: Cannot find ncbi:nuccore:GCA_964014115

Sample Metadata

Date

Collection Date: 2017-12-21

Location

Geographic Location Latitude: 78.11

Geographic Location Longitude: 14.35

Toponym

Geographic Location Country And Or Sea: Svalbard

Environment

Broad Scale Environmental Context: marine benthic biome [ENVO:01000024]

Local Environmental Context: marine neritic benthic zone biome [ENVO:01000025]

Environmental Medium: shallow marine sediment [ENVO:03000034]

Other

Depth: 0.02

Package

Ena Checklist: ERC000021

All retrieved samples

• SAMEA115040709: PacBio HiFi metagenome from surface marine sediment
• SAMEA115040710:
• SAMEA115040711:
• SAMEA115040712:
• SAMEA115040713:
• SAMEA115040714:

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Metadata retrieved 3 months ago