SeqCode Registry
cognitis nomina
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Genomes
sc|0001601
JSON
Genome sc|0001601
Database
NCBI Assembly
Accession
SAMEA5501860
Genomics
Accession
NCBI Assembly:
SAMEA5501860
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.95%
Contamination:
2.46%
Quality:
80.65
Source
BioSample: SAMEA5501860
Automated checks
Failed: Cannot find ncbi:assembly:SAMEA5501860
Sample Metadata
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Analyte Type:
DNA
Other
Not detected
Package
Ncbi Package:
Generic.1.0
All retrieved samples
SAMEA5501860
: DNA sample from Whole Genome Amplified of a human male participant in the dbGaP study "International AMD Genomics Consortium - Exome Chip Experiment"
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMEA5501860
×
gap_accession
phs001039
submitter_handle
NEI AMD International Genomics
biospecimen_repository
NEI AMD International Genomics
study_name
International AMD Genomics Consortium - Exome Chip Experiment
study_design
Case-Control
biospecimen_repository_sample_id
IAMDGC18980
submitted_sample_id
IAMDGC18980
submitted_subject_id
IAMDGC18980
gap_sample_id
2020813
gap_subject_id
1659197
sex
male
tissue
Whole Genome Amplified
analyte_type
DNA
subject_is_affected
No
molecular_data_type
SNP/CNV Genotypes (imputed)
gap_consent_code
1
gap_consent_short_name
GRU
ncbi_package
Generic.1.0
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