Genome sc|0001612

Genomics

Accession

INSDC Nucleotide:JBBKAW000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.31%
• Contamination: 0.0%
• Quality: 98.31

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

621.0 ×

Source

• SRA: SRX22731270

Other features

• G+C Content: 43.37%
• Coding Density: 96.14%
• Codon Table: 11
• N50: 17,130 bp
• Contigs: 103
• Largest Contig: 73,486 bp
• Assembly Length: 1,314,328 bp
• Ambiguous Assembly Fraction: 0.2%

Submitter comments

Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0

Automated checks

Complete

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Last modified 9 months ago

Sample Metadata

BioSample entries

• BioSample: SRS19719933

Date

Collection Date: 2011

Location

Lat Lon: 24.57060 N 98.43615 E

Toponym

Geo Loc Name: China: Gumingquan spring, Tengchong, Yunnan

Environment

Isolation Source: microbial streamers

Env Broad Scale: hot spring [ENVO:00000051]

Env Local Scale: microbial feature [ENVO_01000007]

Env Medium: microbial feature [ENVO_01000007]

Other

Depth: 0

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SRS19719933: Gumingquan 2011 streamer community sample

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Metadata retrieved 8 months ago