JSON

Genome sc|0001612

Name

“Pampinifervens sericum”

Database

INSDC Nucleotide

Accession

JBBKAW000000000

Genomics

Accession
INSDC Nucleotide:JBBKAW000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.31%
  • Contamination: 0.0%
  • Quality: 98.31
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
621.0 ×
Source
Other features
  • G+C Content: 43.37%
  • Coding Density: 96.14%
  • Codon Table: 11
  • N50: 17,130 bp
  • Contigs: 103
  • Largest Contig: 73,486 bp
  • Assembly Length: 1,314,328 bp
  • Ambiguous Assembly Fraction: 0.2%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011
Location
Lat Lon: 24.57060 N 98.43615 E
Toponym
Geo Loc Name: China: Gumingquan spring, Tengchong, Yunnan
Environment
Isolation Source: microbial streamers
Env Broad Scale: hot spring [ENVO:00000051]
Env Local Scale: microbial feature [ENVO_01000007]
Env Medium: microbial feature [ENVO_01000007]
Other
Depth: 0
Package
Ncbi Submission Package: MIMS.me.sediment.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 2 months ago


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