Genome sc|0001613

Genomics

Accession

NCBI Assembly:GCA_037927135.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.37%
• Contamination: 0.41%
• Quality: 96.32

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

250.0 ×

Source

• SRA: SRX22893932

Other features

• G+C Content: 44.06%
• Coding Density: 97.07%
• Codon Table: 11
• N50: 163,709 bp
• Contigs: 12
• Largest Contig: 332,937 bp
• Assembly Length: 1,546,113 bp
• Ambiguous Assembly Fraction: 0.013%

Submitter comments

Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0

Automated checks

Complete

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Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SRS19866000

Date

Collection Date: 2019-01

Location

Lat Lon: 24.95110 N 98.43597 E

Toponym

Geo Loc Name: China: Tengchong

Environment

Isolation Source: hot spring sediment

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SRS19866000: ZZQ_201901

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Metadata retrieved 9 months ago