JSON

Genome sc|0001614

Name

“Pampinifervens tengchongense”

Database

INSDC Nucleotide

Accession

JBBKAY000000000

Genomics

Accession
INSDC Nucleotide:JBBKAY000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.12%
  • Contamination: 0.54%
  • Quality: 90.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.05 ×
Source
Other features
  • G+C Content: 44.33%
  • Coding Density: 96.54%
  • Codon Table: 11
  • N50: 15,255 bp
  • Contigs: 128
  • Largest Contig: 70,772 bp
  • Assembly Length: 1,457,668 bp
  • Ambiguous Assembly Fraction: 0.37%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011
Location
Lat Lon: 25.44012 N 98.44081 E
Toponym
Geo Loc Name: China: Gongxiaoshe spring, Tengchong, Yunnan
Environment
Isolation Source: hot spring sediment and water
Env Broad Scale: hot spring [ENVO:00000051]
Env Local Scale: spring water [ENVO:03600065]| sediment [ENVO:00002007]
Env Medium: spring water [ENVO:03600065]| sediment [ENVO:00002007]
Other
Depth: 0
Package
Ncbi Submission Package: MIMS.me.sediment.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 2 months ago


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