Genome sc|0001615

Genomics

Accession

NCBI Assembly:GCA_037926845.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.82%
• Contamination: 0.61%
• Quality: 91.77

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

40.0 ×

Source

• SRA: SRX22893931

Other features

• G+C Content: 45.99%
• Coding Density: 96.37%
• Codon Table: 11
• N50: 28,621 bp
• Contigs: 100
• Largest Contig: 61,067 bp
• Assembly Length: 1,761,808 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0

Automated checks

Complete

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Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SRS19865999

Date

Collection Date: 2016-01

Location

Lat Lon: 24.95390 N 98.43819 E

Toponym

Geo Loc Name: China: Tengchong

Environment

Isolation Source: hot spring sediment

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SRS19865999: DRTY-6_201601

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Metadata retrieved 8 months ago