SeqCode Registry
cognitis nomina
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Genomes
sc|0001629
JSON
Genome sc|0001629
Name
“Curtobacterium aetherium”
Database
NCBI Assembly
Accession
GCF_018885305.1
Genomics
Accession
NCBI Assembly:
GCF_018885305.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
96.2%
Contamination:
0.9%
Quality:
91.7
Ribosomal and transfer RNA genes
4 16S rRNAs (up to 100.0%)
4 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
273.0 ×
Source
SRA: SRX13047321
Other features
G+C Content:
72.04%
Coding Density:
89.11%
Codon Table:
11
N50:
3,402,814 bp
Contigs:
1
Largest Contig:
3,402,814 bp
Assembly Length:
3,402,814 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type:
Whole blood
Other
Not detected
Package
Ncbi Package:
Model.organism.animal.1.0
All retrieved samples
SRS10984635
: CCB020051-Germline
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS10984635
×
Retrieved via SRX13047321
strain
not applicable
isolate
not applicable
breed
Schnautzer (Miniature)
cultivar
not applicable
ecotype
not apllicable
age
12
dev_stage
Stage IIB
sex
male
tissue
Whole blood
biomaterial_provider
CCOGC
birth_date
not collected
birth_location
not collected
breeding_history
not collected
breeding_method
not collected
cell_line
not applicable
cell_type
Whole blood
growth_protocol
not applicable
health_state
Lung Adenocarinoma
sample_type
Whole blood
sub_species
familiaris
ncbi_package
Model.organism.animal.1.0
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