SeqCode Registry
cognitis nomina
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Genomes
sc|0001646
JSON
Genome sc|0001646
Name
“Accumulibacter meliphilus”
Database
NCBI Assembly
Accession
GCA_003332265.1
Genomics
Accession
NCBI Assembly:
GCA_003332265.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.24%
Contamination:
0.7%
Quality:
91.74
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Sequencing depth
16.0 ×
Source
BioSample: SAMN09667167
Other features
G+C Content:
62.48%
Coding Density:
88.49%
Codon Table:
11
N50:
85,321 bp
Contigs:
120
Largest Contig:
441,828 bp
Assembly Length:
4,701,482 bp
Ambiguous Assembly Fraction:
1.23%
Automated checks
Complete
Last modified
9 months ago
Sample Metadata
BioSample entries
BioSample: SAMN09667167
Date
Collection Date:
2014-06-25
Location
Lat Lon:
43.07 N 89.40 W
Toponym
Geo Loc Name:
USA: Wisconsin
Environment
Sample Type:
metagenomic assembly
Isolation Source:
activated sludge
Other
Not detected
Package
Ncbi Package:
Microbe.1.0
All retrieved samples
SAMN09667167
: Microbe sample from Candidatus Accumulibacter phosphatis
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09667167
×
lat_lon
43.07 N 89.40 W
geo_loc_name
USA: Wisconsin
isolation_source
activated sludge
collection_date
2014-06-25
isolate
UW-LDO-IC
sample_type
metagenomic assembly
environmental_sample
TRUE
metagenomic
TRUE
metagenome_source
activated sludge metagenome
note
This BioSample is a metagenomic assembly obtained from the activated sludge metagenome BioSample: SAMN05172287
ncbi_package
Microbe.1.0
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