Genome sc|0001647


Database

INSDC Nucleotide

Accession

TBD

Genomics

Accession
INSDC Nucleotide:TBD
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
320.0 ×
Source
Other features
  • G+C Content: 45.1%
Submitter comments
 The genome of the symbiont of O. gallaeciana was assembled using long reads from Nanopore sequencing, utilizing Flye v2.8.3 with “--meta” option. The generated assembly was polished four times with Racon v1.4.13 with (-m 8 -x -6 -g -8 -w 500) option and then further polished once with Medaka v1.0.3 (https://nanoporetech.github.io/medaka) with the r941_min_high_g344 model using the MinION raw reads. Subsequent polishing with Illumina short reads was performed using ntHits v0.1.1 (https://github.com/bcgsc/nthits) and ntEdit v1.3.2 with the default settings. Duplications (heterozygous regions) were purged with PURGEhaplotigs v1.0.3 and this ended up in the final genome assembly.
Automated checks
Failed: Cannot find ncbi:nuccore:TBD

Last modified 9 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-07-05
Location
Not detected
Toponym
Geo Loc Name: United Kingdom
Environment
Not detected
Other
Host: Homo sapiens
Package
Ncbi Package: Generic.1.0
Ena Checklist: ERC000033
All retrieved samples

Metadata retrieved 9 months ago


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