Genome sc|0001648

Genomics

Accession

NCBI Assembly:GCA_016714935.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.26%
• Contamination: 0.98%
• Quality: 90.36

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 17 amino acids

Sequencing depth

11.2 ×

Source

• BioSample: SAMN16426320

Other features

• G+C Content: 62.98%
• Coding Density: 88.02%
• Codon Table: 11
• N50: 122,989 bp
• Contigs: 62
• Largest Contig: 308,867 bp
• Assembly Length: 4,325,360 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55.432604 N 10.458855 E

Toponym

Geo Loc Name: Denmark: Odense NE

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from OdNE_18-Q3-R46-58

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Not detected

Package

Ncbi Package: MIMAG.wastewater.6.0

Additional Accessions

SAMN14825714

All retrieved samples

• SAMN16426320: MIMAG Metagenome-assembled Genome sample from Accumulibacter sp.

---

Metadata retrieved 3 months ago