Genome sc|0001652

Genomics

Accession

NCBI Assembly:GCA_016713625.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.81%
• Contamination: 0.98%
• Quality: 88.91

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

23.1 ×

Source

• BioSample: SAMN16425953

Other features

• G+C Content: 62.29%
• Coding Density: 87.49%
• Codon Table: 11
• N50: 576,427 bp
• Contigs: 13
• Largest Contig: 924,488 bp
• Assembly Length: 5,041,483 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 9 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN16425953

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55.552368 N 9.720404 E

Toponym

Geo Loc Name: Denmark: Fredericia

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Fred_18-Q3-R57-64

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Not detected

Package

Ncbi Package: MIMAG.wastewater.6.0

Additional Accessions

SAMN14825693

All retrieved samples

• SAMN16425953: MIMAG Metagenome-assembled Genome sample from Accumulibacter sp.

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Metadata retrieved 9 months ago