Genome sc|0001653


Database

NCBI Assembly

Accession

GCA_016709675.1

Genomics

Accession
NCBI Assembly:GCA_016709675.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.67%
  • Contamination: 3.63%
  • Quality: 78.52
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
15.5 ×
Source
Other features
  • G+C Content: 62.72%
  • Coding Density: 86.69%
  • Codon Table: 11
  • N50: 249,762 bp
  • Contigs: 40
  • Largest Contig: 867,670 bp
  • Assembly Length: 5,402,764 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 9 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-09-07
Location
Lat Lon: 55.488097 N 8.430505 E
Toponym
Geo Loc Name: Denmark: Esbjerg W
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from EsbW_18-Q3-R4-48
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.6.0
Biosamplemodel: MIMAG.wastewater
Additional Accessions
SAMN14825690
All retrieved samples

Metadata retrieved 9 months ago


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