SeqCode Registry
cognitis nomina
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Genomes
sc|0001654
JSON
Genome sc|0001654
Name
“Accumulibacter necessarius”
Database
NCBI Assembly
Accession
GCA_017302435.1
Genomics
Accession
NCBI Assembly:
GCA_017302435.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.1%
Contamination:
0.98%
Quality:
93.2
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 19 amino acids
Sequencing depth
2.0 ×
Source
BioSample: SAMN18059894
Other features
G+C Content:
62.72%
Coding Density:
88.67%
Codon Table:
11
N50:
83,370 bp
Contigs:
88
Largest Contig:
231,847 bp
Assembly Length:
4,564,207 bp
Ambiguous Assembly Fraction:
0.0046%
Automated checks
Complete
Last modified
9 months ago
Sample Metadata
BioSample entries
BioSample: SAMN18059894
Date
Collection Date:
2015
Location
Lat Lon:
43.071 N 89.401 W
Toponym
Geo Loc Name:
USA:WI
Environment
Sample Type:
metagenomic assembly
Isolation Source:
activated sludge
Env Broad Scale:
wastewater
Env Local Scale:
bioreactor
Env Medium:
synthetic media
Other
Not detected
Package
Ncbi Package:
MIMAG.wastewater.6.0
Additional Accessions
SAMN18059819, SAMN18059820, SAMN18059821
All retrieved samples
SAMN18059894
: MIMAG Metagenome-assembled Genome sample from Accumulibacter sp.
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN18059894
×
Keywords: GSC:MIxS;MIMAG:6.0
isolation_source
activated sludge
collection_date
2015
geo_loc_name
USA:WI
lat_lon
43.071 N 89.401 W
isolate
UW12-POB
env_broad_scale
wastewater
env_local_scale
bioreactor
env_medium
synthetic media
metagenomic
1
environmental-sample
1
sample_type
metagenomic assembly
metagenome_source
activated sludge metagenome
derived_from
This BioSample is a metagenomic assembly obtained from the activated sludge metagenome BioSamples: SAMN18059819, SAMN18059820, and SAMN18059821
ncbi_package
MIMAG.wastewater.6.0
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