Genome sc|0001658


Database

NCBI Assembly

Accession

GCA_016709335.1

Genomics

Accession
NCBI Assembly:GCA_016709335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.0%
  • Contamination: 2.35%
  • Quality: 82.25
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 6 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
9.4 ×
Source
Other features
  • G+C Content: 58.78%
  • Coding Density: 85.6%
  • Codon Table: 11
  • N50: 130,711 bp
  • Contigs: 67
  • Largest Contig: 317,633 bp
  • Assembly Length: 4,421,984 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 9 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-09-07
Location
Lat Lon: 55.488097 N 8.430505 E
Toponym
Geo Loc Name: Denmark: Esbjerg W
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from EsbW_18-Q3-R4-48
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Not detected
Package
Ncbi Package: MIMAG.wastewater.6.0
Additional Accessions
SAMN14825690
All retrieved samples

Metadata retrieved 9 months ago


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