Genome sc|0001658

Genomics

Accession

NCBI Assembly:GCA_016709335.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.0%
• Contamination: 2.35%
• Quality: 82.25

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 6 23S rRNAs (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

9.4 ×

Source

• BioSample: SAMN16425899

Other features

• G+C Content: 58.78%
• Coding Density: 85.6%
• Codon Table: 11
• N50: 130,711 bp
• Contigs: 67
• Largest Contig: 317,633 bp
• Assembly Length: 4,421,984 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-09-07

Location

Lat Lon: 55.488097 N 8.430505 E

Toponym

Geo Loc Name: Denmark: Esbjerg W

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from EsbW_18-Q3-R4-48

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Not detected

Package

Ncbi Package: MIMAG.wastewater.6.0

Additional Accessions

SAMN14825690

All retrieved samples

• SAMN16425899: MIMAG Metagenome-assembled Genome sample from Propionivibrio sp.

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Metadata retrieved 3 months ago