SeqCode Registry
cognitis nomina
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Genomes
sc|0001659
JSON
Genome sc|0001659
Name
“Accumulibacter adjunctus”
Database
NCBI Assembly
Accession
GCA_000585015.1
Genomics
Accession
NCBI Assembly:
GCA_000585015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.6%
Contamination:
0.05%
Quality:
92.35
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 16 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN02445085
Other features
G+C Content:
66.32%
Coding Density:
90.1%
Codon Table:
11
N50:
140,740 bp
Contigs:
61
Largest Contig:
399,625 bp
Assembly Length:
4,412,715 bp
Ambiguous Assembly Fraction:
2.64%
Automated checks
Complete
Last modified
9 months ago
Sample Metadata
BioSample entries
BioSample: SAMN02445085
Date
Collection Date:
2011-09-07
Location
Lat Lon:
27.485973 S 153.190699 E
Toponym
Geo Loc Name:
Australia: Brisbane, Thorneside Wastewater Treatment Plant
Environment
Isolation Source:
Thorneside wastewater treatment plant
Env Broad Scale:
EBPR sludge
Env Local Scale:
EBPR bioreactor
Env Medium:
activated sludge
Other
Not detected
Package
Ncbi Package:
MIMS.me.wastewater.6.0
All retrieved samples
SAMN02445085
: MIMS Environmental/Metagenome sample from bioreactor sludge metagenome
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN02445085
×
Keywords: GSC:MIxS;MIMS:6.0
wastewater_type
synthetic wastewater
investigation_type
metagenome
reactor_type
sequencing batch
lat_lon
27.485973 S 153.190699 E
env_broad_scale
EBPR sludge
samp_store_temp
-20
collection_date
2011-09-07
env_local_scale
EBPR bioreactor
label
lab-scale EBPR flocular sludge
project_name
A pangenome of accumulibacter
geo_loc_name
Australia: Brisbane, Thorneside Wastewater Treatment Plant
env_medium
activated sludge
secondary_treatment
EBPR
samp_store_loc
Freezer
phosphate
26.44
isolation_source
Thorneside wastewater treatment plant
ncbi_package
MIMS.me.wastewater.6.0
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