SeqCode Registry
cognitis nomina
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Genomes
sc|0000166
JSON
Genome sc|0000166
Name
“Enterocloster excrementipullorum”
Database
NCBI Assembly
Accession
GCA_019119575.1
Genomics
Accession
NCBI Assembly:
GCA_019119575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.97%
Contamination:
0.63%
Quality:
94.82
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 16 amino acids
Source
BioSample: SAMN15816584
BioSample: SAMEA5754824
Other features
G+C Content:
53.51%
Coding Density:
90.19%
Codon Table:
11
N50:
57,082 bp
Contigs:
81
Largest Contig:
190,797 bp
Assembly Length:
3,180,579 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816584
BioSample: SAMEA5754824
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type:
metagenomic assembly
Other
Host:
Gallus gallus
Package
Ena Checklist:
ERC000011
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
Additional Accessions
ERR3414575
All retrieved samples
SAMN15816584
: Microbe sample from Candidatus Enterocloster excrementipullorum
SAMEA5754824
: Chicken 5 cecal contents: Ranger Classic, Fish meal diet
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816584
×
organism
Candidatus Enterocloster excrementipullorum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: ERR3414575
environmental sample
1
Source Metagenome Bioproject
PRJEB33338
metagenome source
gut metagenome
isolate
CHK180-15479
NCBI submission package
Microbe.1.0
GTDB_organism_name
Enterocloster excrementipullorum
host
Gallus gallus
previous_organism_name
Firmicutes bacterium
NCBI_LCA_organism_name
Firmicutes bacterium
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMEA5754824
×
Metagenome from cecal contents of chicken 5. Female Ranger Classic on Fish Meal diet.
ENA-CHECKLIST
ERC000011
organism
metagenome
ENA-FIRST-PUBLIC
2019-07-11
ENA-LAST-UPDATE
2019-07-04
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