JSON

Genome sc|0001661

Name

“Benthobacter isfjordensis”

Database

NCBI Assembly

Accession

GCA_964014115.1

Genomics

Accession
NCBI Assembly:GCA_964014115.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.0%
  • Contamination: 3.8%
  • Quality: 75.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
19.8 ×
Source
Other features
  • G+C Content: 62.0%
  • Coding Density: 89.25%
  • Codon Table: 11
  • N50: 226,422 bp
  • Contigs: 31
  • Largest Contig: 425,214 bp
  • Assembly Length: 2,893,760 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The tools and softwares used to get and assess the quality of the genome are listed below: 
  • The assembler was Flye-meta v2.9.1
  • The binner was MaxBin2 v2.2.7
  • Completenes, contamination, and GC content were determined using CheckM v1.2.2
  • 16S and 23S rRNA gene were recovered using barnap v0.9
  • Number of unique tRNA was determined using DRAM v1.2.2
Automated checks
Complete
Last modified 9 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-12-21 • 2018-05-01 • 2019-04-25 • 2019-09-13 • 2021-12-08 • 2022-04-30
Location
Geographic Location Latitude: 78.11
Geographic Location Longitude: 14.35
Toponym
Geographic Location Country And Or Sea: Svalbard
Environment
Broad Scale Environmental Context: marine benthic biome [ENVO:01000024]
Local Environmental Context: marine neritic benthic zone biome [ENVO:01000025]
Environmental Medium: shallow marine sediment [ENVO:03000034]
Other
Depth: 0.02
Package
Ena Checklist: ERC000021
All retrieved samples
Metadata retrieved 9 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license