Genome sc|0001662

Genomics

Accession

NCBI Assembly:GCA_016710885.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.52%
• Contamination: 0.34%
• Quality: 94.82

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

13.0 ×

Source

• BioSample: SAMN16426100

Other features

• G+C Content: 61.05%
• Coding Density: 89.13%
• Codon Table: 11
• N50: 171,028 bp
• Contigs: 31
• Largest Contig: 385,635 bp
• Assembly Length: 3,246,725 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 9 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN16426100

Date

Collection Date: 2018-08-29

Location

Lat Lon: 57.577275 N 9.992971 E

Toponym

Geo Loc Name: Denmark: Hirtshals

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Hirt_18-Q3-R61-65

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Not detected

Package

Ncbi Package: MIMAG.wastewater.6.0

Additional Accessions

SAMN14825699

All retrieved samples

• SAMN16426100: MIMAG Metagenome-assembled Genome sample from Betaproteobacteria bacterium

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Metadata retrieved 9 months ago