Genome sc|0001673

Genomics

Accession

NCBI Assembly:GCA_037179605.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.51%
• Contamination: 0.29%
• Quality: 98.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

225.0 ×

Source

• BioSample: SAMN32187524

Other features

• G+C Content: 62.6%
• Coding Density: 86.59%
• Codon Table: 11
• N50: 211,414 bp
• Contigs: 123
• Largest Contig: 523,142 bp
• Assembly Length: 6,441,753 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quast was used to calculate the Assembly statistics, CheckM was used to check for completeness and contamination. Barrnap was used to check for completeness of rRNA fragments, tRNA elements were scanned using tRNAscan. 

Automated checks

Complete

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Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN32187524

Date

Collection Date: 2016

Location

Lat Lon: 29.8665 S 17.6083 E

Toponym

Geo Loc Name: South Africa: Brakputs

Environment

Isolation Source: rhizosphere soil

Env Broad Scale: Succulent Karoo biome

Env Local Scale: Rhizosphere soil

Env Medium: soil sample 1326

Other

Host: Lessertia diffusa

Package

Ncbi Package: MIGS.ba.plant-associated.6.0

All retrieved samples

• SAMN32187524: MIGS Cultured Bacterial/Archaeal sample from Mesorhizobium sp. Ld1326N3

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Metadata retrieved 8 months ago