Genome sc|0001676

Genomics

Accession

NCBI Assembly:GCA_016719385.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.16%
• Contamination: 0.85%
• Quality: 88.91

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

23.2 ×

Source

• BioSample: SAMN16426244
• BioSample: SAMN14825708

Other features

• G+C Content: 67.97%
• Coding Density: 88.91%
• Codon Table: 11
• N50: 911,658 bp
• Contigs: 11
• Largest Contig: 1,245,818 bp
• Assembly Length: 4,214,851 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55.695362 N 12.612702 E

Toponym

Geo Loc Name: Denmark: Lynetten

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Lyne_18-Q3-R50-59 • activated sludge from wastewater treatment plant

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.5.0 • MIMS.me.wastewater.6.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426244: MIMAG Metagenome-assembled Genome sample from Candidatus Microthrix sp.
• SAMN14825708: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved about 1 month ago