Genome sc|0001678

Genomics

Accession

INSDC Nucleotide:LN827929.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0% (automated estimate: 100.0%)
• Contamination: 0.0% (automated estimate: 1.9%)
• Quality: 100.0 (automated estimate: 90.5)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 20 amino acids (automated estimate: 20)

Sequencing depth

482.0 ×

Source

• BioSample: SAMEA3165955

Other features

• G+C Content: 37.0% (automated estimate: 36.97%)
• Coding Density: 93.95%
• Codon Table: 11
• N50: 1,356,428 bp
• Contigs: 1
• Largest Contig: 1,356,428 bp
• Assembly Length: 1,356,428 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

This is an axenic bacterial strain isolated from the water column of Lake Zurich, Switzerland. The genome is complete, consisting of 1 circular chromosome. Automated quality assessment by CheckM, however gives 79.4% completeness and 1.29% contamination, which might be because of genome-streamlining of this taxon.

Automated checks

Complete

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Last modified 8 months ago