Genome sc|0001680

Genomics

Accession

NCBI Assembly:GCF_009758445.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.69%
• Quality: 91.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 83.9%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

160.0 ×

Source

• BioSample: SAMN13503952

Other features

• G+C Content: 56.7%
• Coding Density: 87.3%
• Codon Table: 11
• N50: 795,691 bp
• Contigs: 37
• Largest Contig: 1,709,128 bp
• Assembly Length: 6,095,369 bp
• Ambiguous Assembly Fraction: 0.023%

Submitter comments

CheckM2 was used to assess quality and contamination. Bakta was used to annotate genomes and determine GC content. EzBioCloud was used to assess % 16S rRNA gene. 23S gene is 2907 nt long (compared to standard E. coli 23S rRNA gene).

Sequencing depth retrieved from GenBank record.

tRNA-Ala, tRNA-Arg, tRNA-Asn, tRNA-Asp, tRNA-Cys, tRNA-Gln, tRNA-Glu, tRNA-Gly, tRNA-His, tRNA-Ile, tRNA-Leu, tRNA-Lys, tRNA-Met, tRNA-Phe, tRNA-Pro, tRNA-Ser, tRNA-Thr, tRNA-Trp, tRNA-Tyr, tRNA-Val

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2008

Location

Not detected

Toponym

Geo Loc Name: China: Jiangxi

Environment

Sample Type: cell culture

Isolation Source: animal gut

Other

Not detected

Package

Ncbi Package: Microbe.1.0

All retrieved samples

• SAMN13503952: Microbe sample from Raoultella sp. 10-1

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Metadata retrieved 3 months ago